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gwf2_scaffold_96_prodigal-single.1__X__X__00265
Bact-Virgwf2_scaffold_96_prodigal-single.1__X__X__00265
Identity
- Kingdom:
- phage
Quality
72.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-115
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4v19K02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.71 | 55.0 | 5.16e-01 | 83.6% | 93.3% |
| 2xseA00 | 1.20.120.1440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain | 0.68 | 57.0 | 4.27e-01 | 96.7% | 67.3% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.66 | 54.0 | 5.23e-01 | 95.1% | 84.5% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.64 | 52.0 | 4.24e-01 | 95.1% | 73.4% |
| 2v9kA01 | 1.10.10.2050 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 46.0 | 4.95e-01 | 83.6% | 94.0% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 4.46e-01 | 98.4% | 77.8% |
| 3rh9A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.59 | 45.0 | 2.87e-01 | 82.0% | 53.6% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.58 | 49.0 | 4.54e-01 | 98.4% | 91.4% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.58 | 39.0 | 3.21e-01 | 72.1% | 61.0% |
| 6pw7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.57 | 44.0 | 4.27e-01 | 91.8% | 90.1% |
| 1euhA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 45.0 | 2.89e-01 | 86.9% | 69.7% |
| 6fjxA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 44.0 | 2.87e-01 | 88.5% | 63.1% |
| 5j6bD01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 43.0 | 2.79e-01 | 86.9% | 38.7% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.53 | 43.0 | 3.64e-01 | 93.4% | 78.2% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.53 | 40.0 | 3.83e-01 | 83.6% | 89.2% |
| 3ju8A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 42.0 | 2.72e-01 | 88.5% | 54.3% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 43.0 | 3.81e-01 | 100.0% | 64.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3806070 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.78 | 59.0 | 6.42e-01 | 85.2% | 100.0% |
| 3428573 | 101.21.1.0 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit | 0.76 | 63.0 | 6.17e-01 | 95.1% | 84.6% |
| 3289889 | 7523.1.1.19 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › NMT1 | 0.73 | 62.0 | 4.21e-01 | 93.4% | 72.6% |
| 3576763 | 101.1.1.332 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Nucleolin_bd | 0.71 | 58.0 | 5.75e-01 | 93.4% | 87.7% |
| 3217750 | 101.21.1.2 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd | 0.69 | 61.0 | 5.86e-01 | 100.0% | 97.1% |
| 4996283 | 101.43.1.4 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › HTH_AsnC-type | 0.69 | 55.0 | 5.47e-01 | 98.4% | 84.6% |
| 4379527 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.68 | 54.0 | 4.91e-01 | 100.0% | 63.5% |
| 4936146 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.64 | 48.0 | 5.04e-01 | 85.2% | 100.0% |
| 4026719 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 54.0 | 4.40e-01 | 100.0% | 58.4% |
| 3384684 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 53.0 | 4.89e-01 | 100.0% | 85.9% |
| 4928641 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.62 | 48.0 | 4.60e-01 | 91.8% | 72.0% |
| 3782390 | 3444.1.1.3 ↗ | alpha arrays › DP domain › DP domain › DP domain › Hit1_C | 0.57 | 40.0 | 3.69e-01 | 75.4% | 60.2% |
| 5064255 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.54 | 48.0 | 3.44e-01 | 98.4% | 84.4% |
D2
medium
residues 137-249
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.68 | 49.0 | 4.05e-01 | 73.5% | 77.5% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.58 | 40.0 | 3.72e-01 | 70.8% | 58.7% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 41.0 | 3.76e-01 | 83.2% | 94.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595904 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 55.0 | 5.13e-01 | 74.3% | 100.0% |
| 3970792 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.62 | 41.0 | 4.03e-01 | 83.2% | 62.5% |
| 1156995 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.55 | 49.0 | 4.28e-01 | 100.0% | 69.4% |