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gwf2_scaffold_96_prodigal-single.1__X__X__00267
Bact-Virgwf2_scaffold_96_prodigal-single.1__X__X__00267
Identity
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 311-445_667-702
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14890.12 best | Intein_splicing | 64.3 | 1.60e-17 | 95.3% | 100.0% |
| PF01776.23 | Ribosomal_L22e | 25.7 | 1.70e-05 | 64.9% | 66.4% |
D2
medium
residues 453-530
D3
medium
residues 575-666
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jpcA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 45.0 | 5.29e-01 | 80.4% | 93.4% |
| 4ivnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 48.0 | 5.28e-01 | 90.2% | 84.2% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 38.0 | 4.96e-01 | 81.5% | 98.0% |
| 1k78I00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 43.0 | 5.13e-01 | 81.5% | 96.6% |
| 2o3fA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 49.0 | 5.24e-01 | 87.0% | 85.4% |
| 2m3aA00 | 1.10.10.1900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like | 0.66 | 43.0 | 4.87e-01 | 80.4% | 91.0% |
| 1zq3P00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 39.0 | 4.47e-01 | 85.9% | 82.4% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 40.0 | 4.58e-01 | 80.4% | 90.5% |
| 1iv8A04 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.56 | 44.0 | 4.37e-01 | 84.8% | 82.5% |
| 1hypA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.55 | 34.0 | 3.66e-01 | 77.2% | 74.7% |
| 1hssA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.53 | 37.0 | 3.56e-01 | 91.3% | 62.2% |
| 1i4wA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.53 | 33.0 | 3.62e-01 | 78.3% | 77.3% |
| 4i4cB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 41.0 | 2.74e-01 | 85.9% | 52.3% |
| 4hhyC01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.52 | 38.0 | 3.46e-01 | 79.3% | 61.1% |
| 2yb5F01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.51 | 36.0 | 3.75e-01 | 73.9% | 91.9% |
| 1m2oA04 | 1.20.120.730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain | 0.51 | 38.0 | 3.39e-01 | 80.4% | 66.4% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 34.0 | 3.29e-01 | 83.7% | 59.3% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3513576 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.75 | 40.0 | 5.03e-01 | 78.3% | 87.3% |
| 3622015 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.74 | 43.0 | 5.21e-01 | 80.4% | 88.3% |
| 3589672 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.74 | 50.0 | 5.66e-01 | 89.1% | 91.4% |
| 3604252 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.73 | 43.0 | 5.36e-01 | 79.3% | 98.2% |
| 4008778 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 43.0 | 5.36e-01 | 84.8% | 100.0% |
| 4998812 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.72 | 41.0 | 4.82e-01 | 82.6% | 81.5% |
| 3901880 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 43.0 | 4.96e-01 | 84.8% | 84.6% |
| 3933926 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 44.0 | 5.13e-01 | 84.8% | 89.2% |
| 3553786 | 101.1.1.244 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS | 0.70 | 48.0 | 5.28e-01 | 85.9% | 88.0% |
| 3884711 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 44.0 | 5.08e-01 | 89.1% | 92.3% |
| 4518856 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.69 | 49.0 | 5.45e-01 | 84.8% | 90.7% |
| 3223453 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.69 | 53.0 | 5.12e-01 | 82.6% | 82.9% |
| 5074546 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 42.0 | 4.34e-01 | 83.7% | 67.1% |
| 5003693 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 42.0 | 4.76e-01 | 83.7% | 89.2% |
| 3924079 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.63 | 44.0 | 4.55e-01 | 80.4% | 76.5% |
| 3954386 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.61 | 44.0 | 4.11e-01 | 87.0% | 60.0% |
| 4933370 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.61 | 43.0 | 4.36e-01 | 79.3% | 74.4% |
| 4589278 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.60 | 47.0 | 4.49e-01 | 83.7% | 72.4% |
| 3965831 | 101.1.3.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF772 | 0.59 | 47.0 | 4.31e-01 | 85.9% | 67.5% |
| 3937288 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 40.0 | 4.21e-01 | 70.7% | 83.5% |
| 3781865 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.59 | 44.0 | 4.08e-01 | 85.9% | 61.7% |
| 4961485 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 45.0 | 4.08e-01 | 89.1% | 61.5% |
| 3904155 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 44.0 | 4.70e-01 | 88.0% | 98.8% |
| 4945046 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 34.0 | 3.30e-01 | 79.3% | 51.4% |
| 4125245 | 101.1.2.813 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF772 | 0.56 | 42.0 | 4.02e-01 | 89.1% | 68.2% |
| 3396511 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.55 | 42.0 | 4.17e-01 | 81.5% | 100.0% |
| 3539252 | 627.1.1.1 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 | 0.55 | 41.0 | 3.39e-01 | 84.8% | 42.3% |
| 4067977 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.54 | 31.0 | 3.37e-01 | 76.1% | 68.0% |
| 3488174 | 610.2.1.1 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical | 0.52 | 38.0 | 3.71e-01 | 79.3% | 93.3% |
D4
medium
residues 896-951