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gwf2_scaffold_96_prodigal-single.1__X__X__00417

Bact-Vir

gwf2_scaffold_96_prodigal-single.1__X__X__00417

Identity

Kingdom:
phage

Quality

88.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-63
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.72 59.0 4.93e-01 100.0% 52.3%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.69 55.0 4.83e-01 96.8% 59.6%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.65 45.0 3.81e-01 71.4% 56.9%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 50.0 4.23e-01 88.9% 50.4%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 46.0 3.38e-01 77.8% 40.0%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 53.0 3.34e-01 92.1% 32.7%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.63 48.0 2.88e-01 84.1% 19.1%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.31e-01 92.1% 32.8%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 48.0 4.14e-01 90.5% 65.7%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 52.0 4.21e-01 96.8% 67.7%
5zc1D00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 4.07e-01 84.1% 80.6%
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 51.0 3.62e-01 98.4% 37.6%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 51.0 3.51e-01 98.4% 54.0%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.59 51.0 3.58e-01 100.0% 46.8%
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.09e-01 96.8% 24.9%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 46.0 2.85e-01 85.7% 34.3%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 2.77e-01 82.5% 23.6%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.57 46.0 3.94e-01 96.8% 63.2%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 43.0 3.33e-01 85.7% 92.8%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.14e-01 96.8% 31.0%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 3.69e-01 79.4% 96.9%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 4.16e-01 96.8% 74.8%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 3.93e-01 88.9% 86.1%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 45.0 4.08e-01 96.8% 64.4%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 3.61e-01 96.8% 52.3%
3g16B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.29e-01 85.7% 71.1%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 46.0 3.69e-01 98.4% 56.5%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 40.0 3.20e-01 81.0% 95.9%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 46.0 3.47e-01 98.4% 47.0%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 46.0 3.08e-01 96.8% 47.7%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.71e-01 93.7% 54.5%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.23e-01 84.1% 43.9%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.53 43.0 3.33e-01 96.8% 50.6%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 45.0 3.22e-01 96.8% 86.2%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 45.0 3.66e-01 96.8% 99.2%
6u8yK01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 46.0 3.43e-01 98.4% 39.6%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.84e-01 100.0% 24.4%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.48e-01 95.2% 60.8%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.52 44.0 3.46e-01 100.0% 58.0%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.74e-01 98.4% 77.7%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.52 44.0 3.48e-01 100.0% 86.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 40.0 3.85e-01 85.7% 90.5%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 40.0 3.25e-01 92.1% 80.3%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.52 44.0 3.43e-01 98.4% 54.4%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.15e-01 92.1% 47.7%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.52 43.0 3.60e-01 96.8% 93.2%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.76e-01 100.0% 75.4%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.51 43.0 3.43e-01 100.0% 49.7%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 43.0 3.52e-01 93.7% 100.0%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 39.0 2.49e-01 87.3% 27.1%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 3.23e-01 82.5% 55.0%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.58e-01 95.2% 66.7%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 3.33e-01 82.5% 65.3%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.27e-01 98.4% 56.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.50e-01 87.3% 71.0%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 39.0 2.85e-01 90.5% 48.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3911145 223.7.1.1 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.71 57.0 4.49e-01 100.0% 40.7%
3730237 2008.1.1.99 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.69 59.0 3.99e-01 96.8% 34.6%
3310438 5.1.4.145 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TAF1C_beta-prop 0.67 57.0 3.38e-01 93.7% 24.6%
3226032 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 49.0 5.24e-01 85.7% 94.3%
3703112 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 55.0 4.61e-01 98.4% 56.7%
4995812 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.66 54.0 4.77e-01 95.2% 82.0%
3382274 5.1.4.369 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.66 52.0 2.92e-01 87.3% 21.8%
3478132 5.1.4.327 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.65 54.0 3.29e-01 92.1% 27.5%
3499988 5.1.4.327 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.65 54.0 3.01e-01 92.1% 14.0%
3611332 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 53.0 3.23e-01 92.1% 29.4%
3932344 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.65 56.0 3.54e-01 98.4% 85.0%
3516856 5.1.4.327 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.65 54.0 3.04e-01 92.1% 13.1%
162286 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 52.0 4.20e-01 90.5% 55.2%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 54.0 3.23e-01 92.1% 34.2%
3487112 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 53.0 3.17e-01 92.1% 24.5%
4025734 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.64 49.0 3.41e-01 85.7% 25.3%
3168805 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 53.0 3.34e-01 92.1% 32.1%
3629780 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 47.0 2.96e-01 82.5% 33.2%
3274691 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 51.0 3.12e-01 92.1% 28.8%
3198214 274.1.1.48 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7924 0.63 52.0 5.07e-01 95.2% 100.0%
5052523 283.3.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › MK0786-like › MK0786-like › DHNA 0.63 52.0 4.28e-01 96.8% 91.2%
5021851 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.62 50.0 3.21e-01 92.1% 21.4%
3726266 3363.1.1.0 beta sandwiches › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs 0.62 53.0 4.69e-01 95.2% 72.2%
4082864 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 48.0 4.17e-01 88.9% 57.1%
3722420 2008.1.1.143 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.62 48.0 3.58e-01 84.1% 55.0%
3579807 101.1.2.709 alpha arrays › HTH › HTH › winged helix domain › Hexokinase_1 0.61 44.0 3.74e-01 74.6% 50.0%
3240616 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 50.0 3.16e-01 93.7% 25.4%
3631256 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.60 51.0 3.19e-01 96.8% 29.6%
5074557 283.3.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › MK0786-like › MK0786-like › DHNA 0.60 51.0 4.12e-01 98.4% 89.2%
3511884 5.1.4.262 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 0.59 51.0 3.11e-01 98.4% 18.9%
3812208 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 2.83e-01 92.1% 30.7%
4946576 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.57 45.0 3.30e-01 87.3% 39.7%
3688114 5.1.4.100 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.57 45.0 2.73e-01 90.5% 29.0%
3496629 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.57 45.0 3.41e-01 92.1% 81.2%
3193676 5.1.5.222 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Med16_N 0.56 44.0 2.67e-01 92.1% 29.4%
3628966 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 46.0 3.31e-01 100.0% 77.8%
3940409 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 50.0 2.95e-01 100.0% 20.7%
5028275 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 49.0 3.06e-01 100.0% 80.0%
3601211 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 45.0 3.11e-01 96.8% 71.2%
3249154 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 46.0 3.27e-01 95.2% 66.5%
4091266 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.54 42.0 2.48e-01 90.5% 16.1%
4138593 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.54 46.0 3.68e-01 100.0% 58.5%
185414 3347.1.1.1 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.54 40.0 3.24e-01 84.1% 44.2%
3623666 827.1.1.1 a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain › Integrin_B_tail 0.54 45.0 4.20e-01 96.8% 85.0%
4962576 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.54 46.0 3.58e-01 100.0% 59.3%
3201982 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 44.0 4.06e-01 96.8% 85.9%
3275592 206.1.3.7 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp 0.53 47.0 3.20e-01 100.0% 72.3%
3936956 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 43.0 3.64e-01 93.7% 96.4%
4134185 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.52 44.0 3.53e-01 100.0% 59.0%
4408843 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.52 45.0 3.53e-01 100.0% 59.3%
3565104 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.32e-01 90.5% 70.6%
4977528 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.51 44.0 3.49e-01 98.4% 87.4%
5041343 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 40.0 3.89e-01 92.1% 76.0%
3782947 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 41.0 3.49e-01 100.0% 91.7%
4043415 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 40.0 2.46e-01 93.7% 15.9%
4297447 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 39.0 3.21e-01 93.7% 52.1%