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he65

Euk-Vir

Mamestra_brassicae_multiple_nucleopolyhedrovirus

he65__YP_009011091__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219

Identity

Accession:
YP_009011091 ↗
Protein ID:
he65
Kingdom:
euk

Quality

72.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Mamestra_brassicae_multiple_nucleopolyhedrovirus

TaxID: 78219

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 501-582
PDB
Domain cluster: rep: unknown_similar_to_AMEV019__YP_008003802__Mythimna_separata_entomopoxvirus_L__1293572__D449-527
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 5.38e-01 75.6% 82.8%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.70 52.0 5.03e-01 79.3% 72.8%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 49.0 5.19e-01 78.0% 86.1%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 47.0 5.03e-01 73.2% 94.4%
2m7bA00 1.10.10.1920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 47.0 4.83e-01 75.6% 87.0%
3rrcB01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.65 56.0 4.65e-01 100.0% 83.5%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 45.0 4.22e-01 75.6% 65.1%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.63 52.0 3.38e-01 93.9% 78.5%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 45.0 3.78e-01 76.8% 91.5%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.61 43.0 4.23e-01 75.6% 84.8%
1q8cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.61 52.0 4.44e-01 95.1% 97.0%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 50.0 3.54e-01 96.3% 69.7%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.60 43.0 3.94e-01 75.6% 86.2%
4uurA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 41.0 3.65e-01 74.4% 97.6%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.58 48.0 4.33e-01 91.5% 87.0%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.58 42.0 3.84e-01 76.8% 86.2%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 49.0 4.31e-01 100.0% 69.7%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 42.0 3.51e-01 78.0% 80.7%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 41.0 4.05e-01 78.0% 74.4%
7m2wE01 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.56 41.0 2.85e-01 80.5% 41.6%
2dg8D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 46.0 3.75e-01 100.0% 84.4%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 36.0 3.65e-01 70.7% 74.7%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 45.0 3.81e-01 100.0% 78.5%
6wk3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 44.0 3.76e-01 98.8% 69.0%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 42.0 3.18e-01 92.7% 73.2%
2d2sA02 1.20.58.1220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain 0.50 37.0 3.55e-01 81.7% 80.2%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.50 36.0 3.41e-01 76.8% 92.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962283 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.74 54.0 5.46e-01 76.8% 90.0%
3946046 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.73 52.0 5.37e-01 75.6% 81.3%
5066348 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.70 47.0 4.80e-01 73.2% 71.2%
3708859 633.24.1.0 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.69 49.0 4.53e-01 74.4% 88.6%
3262205 633.24.1.0 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.66 48.0 4.68e-01 78.0% 87.8%
1031040 101.1.19.1 ↗ alpha arrays › HTH › HTH › Bacteriophage lambda ea8.5-related › Lambda_ea8_5 0.65 47.0 4.83e-01 75.6% 87.0%
5054353 2006.1.4.50 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.65 51.0 3.76e-01 85.4% 93.0%
3623710 3277.2.1.1 ↗ alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.64 54.0 5.04e-01 96.3% 85.7%
3935358 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.61 50.0 4.38e-01 92.7% 61.5%
4634618 170.1.1.25 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PNMA 0.60 51.0 4.65e-01 95.1% 74.5%
3386308 604.3.1.46 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF28048 0.59 43.0 4.26e-01 79.3% 80.0%
3236092 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.59 42.0 4.30e-01 75.6% 80.0%
3856673 396.1.1.8 ↗ few secondary structure elements › CCHC-type 1 zinc finger › Retrovirus zinc finger-related domains › Retrovirus zinc finger-related domains › PNMA 0.59 49.0 4.64e-01 93.9% 82.0%
5001306 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.58 50.0 4.16e-01 96.3% 65.5%
4223286 633.23.1.9 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.54 38.0 2.94e-01 74.4% 82.6%
3420023 633.21.1.18 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.53 37.0 3.02e-01 74.4% 65.5%
4500875 193.1.1.27 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CCDC93_N 0.53 35.0 2.99e-01 78.0% 41.5%
3473737 109.4.1.570 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps8 0.51 43.0 2.76e-01 96.3% 28.0%
3187449 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.51 36.0 3.04e-01 74.4% 77.9%
3212248 193.1.1.27 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CCDC93_N 0.50 34.0 3.18e-01 81.7% 55.2%
D2 medium residues 27-134
PDB
Domain cluster: rep: LR881104.1__CAD5236280.1__LLCLJKAH_00291__00291__D3-121_248-259
D3 medium residues 135-259
PDB
Domain cluster: rep: HE65__NP_613115__Mamestra_configurata_nucleopolyhedrovirus_A__207830__D108-128_141-234
D4 medium residues 294-319_444-500
PDB
Domain cluster: rep: he65__YP_009112583__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D258-283_404-459
D5 medium residues 320-443
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00216__D38-133
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09414.16 best RNA_ligase 28.8 1.80e-06 98.4% 57.9%