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he65

Euk-Vir

Agrotis_segetum_nucleopolyhedrovirus_B

he65__YP_009112583__Agrotis_segetum_nucleopolyhedrovirus_B__1580580

Identity

Accession:
YP_009112583 ↗
Protein ID:
he65
Kingdom:
euk

Quality

77.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Agrotis_segetum_nucleopolyhedrovirus_B

TaxID: 1580580

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 460-539
PDB
Domain cluster: rep: unknown_similar_to_AMEV019__YP_008003802__Mythimna_separata_entomopoxvirus_L__1293572__D449-527
D2 medium residues 1-109_226-257
PDB
Domain cluster: rep: LR881104.1__CAD5236280.1__LLCLJKAH_00291__00291__D3-121_248-259
D3 medium residues 110-123_137-225
PDB
Domain cluster: rep: HE65__YP_003422402__Pseudalatia_unipuncta_granulovirus__36355__D144-219
D4 medium residues 258-283_404-459
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xdnA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.76 60.0 5.49e-01 86.6% 89.1%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.65 51.0 5.50e-01 84.1% 100.0%
1yt3A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 47.0 3.58e-01 95.1% 34.5%
3d3aA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 44.0 3.76e-01 78.0% 67.9%
1bpvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 4.20e-01 81.7% 86.5%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.59 47.0 3.71e-01 86.6% 98.3%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 46.0 3.41e-01 95.1% 33.3%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 34.0 3.43e-01 89.0% 54.7%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 32.0 3.50e-01 91.5% 67.2%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.86e-01 89.0% 98.6%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.57 42.0 3.57e-01 82.9% 46.2%
7vqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 4.10e-01 80.5% 93.5%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 41.0 3.72e-01 76.8% 98.2%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.56 31.0 3.32e-01 84.1% 60.6%
3orjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.94e-01 82.9% 90.7%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.89e-01 74.4% 81.4%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 4.06e-01 84.1% 93.7%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.52e-01 84.1% 86.0%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.88e-01 72.0% 96.0%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.53 34.0 3.64e-01 91.5% 75.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 30.0 3.21e-01 93.9% 63.2%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 30.0 3.27e-01 91.5% 67.7%
1gxsB02 3.40.50.11320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 3.58e-01 87.8% 64.3%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.55e-01 89.0% 88.3%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.84e-01 100.0% 81.7%
3il0A00 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 37.0 3.30e-01 78.0% 96.1%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 30.0 3.32e-01 96.3% 76.7%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 29.0 3.27e-01 95.1% 76.3%
3s40A02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 39.0 3.37e-01 85.4% 97.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995027 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.71 39.0 3.31e-01 84.1% 34.4%
3610835 206.1.3.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.66 58.0 3.93e-01 96.3% 76.6%
5042313 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 36.0 3.73e-01 87.8% 60.0%
3560019 109.4.1.1912 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26254 0.62 51.0 4.31e-01 90.2% 86.4%
3912151 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 38.0 4.09e-01 93.9% 75.0%
4582948 11.1.1.156 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG3 0.59 48.0 4.37e-01 89.0% 83.6%
4325609 11.1.4.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PTR2 0.59 44.0 4.35e-01 79.3% 77.8%
3607580 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 50.0 3.65e-01 95.1% 43.1%
3837918 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 46.0 4.59e-01 87.8% 85.5%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 32.0 3.50e-01 90.2% 67.2%
3629491 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 33.0 3.91e-01 81.7% 87.3%
4025293 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 45.0 4.66e-01 90.2% 100.0%
3610214 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 37.0 3.41e-01 72.0% 70.4%
3928985 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 31.0 3.07e-01 91.5% 50.0%
4776537 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.54 38.0 3.08e-01 87.8% 39.5%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 38.0 4.12e-01 74.4% 95.7%
4151014 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 37.0 4.24e-01 74.4% 98.3%
4088209 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 37.0 4.13e-01 73.2% 98.5%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.89e-01 72.0% 97.3%
5012954 632.2.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.52 37.0 3.08e-01 73.2% 69.3%
4342488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 36.0 4.01e-01 73.2% 93.7%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 37.0 3.83e-01 74.4% 86.7%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 37.0 3.83e-01 74.4% 92.0%
5042869 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.51 32.0 3.52e-01 87.8% 80.0%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 37.0 3.99e-01 76.8% 95.7%
5057681 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.78e-01 81.7% 85.6%
3212254 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.50 43.0 3.11e-01 96.3% 37.6%
3684412 5.1.4.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd 0.50 35.0 2.12e-01 89.0% 11.2%
D5 medium residues 284-403
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00216__D38-133
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09414.16 best RNA_ligase 30.9 3.90e-07 100.0% 60.2%