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heat_shock_protein_homologue

Euk-Vir

Potato_yellow_vein_virus

heat_shock_protein_homologue__YP_054417__Potato_yellow_vein_virus__103881

Identity

Accession:: YP_054417 ↗
Protein ID:: heat_shock_protein_homologue
Kingdom:: euk

Quality

84.7 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Crinivirus› Potato_yellow_vein_virus

TaxID: 103881

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 374-475

PDB

Domain cluster: rep: heat_shock_protein_70_homolog__YP_009241368__Grapevine_leafroll-associated_virus_13__1815581__D381-469

D2 high residues 496-549

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4dkcB00	1.20.1250.80	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34	0.60	45.0	3.25e-01	83.3%	49.4%
2zxqA06	1.20.1270.70	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle	0.58	46.0	4.37e-01	92.6%	90.9%
7r5yA01	3.40.50.1240	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like	0.58	49.0	2.97e-01	100.0%	40.7%
3iqcA00	1.20.120.340	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS	0.57	45.0	3.59e-01	90.7%	56.3%
1z0xA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.57	36.0	3.42e-01	90.7%	51.5%
3bbzA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.57	44.0	4.59e-01	96.3%	100.0%
1gjsA00	1.10.8.40	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain	0.56	42.0	4.02e-01	83.3%	70.8%
4kjmA02	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.55	45.0	4.52e-01	98.1%	94.5%
4heoA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.55	44.0	4.46e-01	100.0%	94.5%
2xigA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	40.0	3.42e-01	79.6%	95.6%
3kzqA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.54	43.0	3.10e-01	100.0%	50.5%
2oebA00	1.10.520.30	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain	0.51	41.0	3.16e-01	100.0%	58.6%
2iw3A02	1.20.1390.20	Mainly Alpha › Up-down Bundle › PWI domain ›	0.50	40.0	3.45e-01	90.7%	86.7%
3cxbA03	1.10.1740.30	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain	0.50	35.0	3.21e-01	77.8%	77.8%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3645152	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.71	59.0	5.40e-01	92.6%	98.6%
3760028	150.1.1.91 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › SCAMP	0.65	56.0	4.10e-01	100.0%	67.1%
4378403	210.1.2.1 ↗	a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase	0.63	51.0	2.87e-01	94.4%	14.4%
3262972	158.1.1.0 ↗	alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase	0.61	42.0	2.48e-01	79.6%	8.7%
4968828	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.57	44.0	3.05e-01	88.9%	26.7%
4449497	610.3.1.1 ↗	alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey	0.52	37.0	2.68e-01	77.8%	26.5%
4955370	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.51	40.0	3.64e-01	90.7%	83.7%

D3 medium residues 1-135

PDB

Domain cluster: rep: heat-shock_protein__NP_619695__Lettuce_infectious_yellows_virus__31713__D2-172

D4 medium residues 136-219_313-366

PDB

Domain cluster: rep: heat_shock_protein_70__YP_293699__Tomato_chlorosis_virus__67754__D171-224_298-370

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00012.27 best	HSP70	46.9	1.70e-12	62.3%	13.7%

D5 medium residues 220-312

PDB

Domain cluster: rep: p67__YP_003075968__Carrot_yellow_leaf_virus__656190__D231-307