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helicase-1

Euk-Vir

Clostera_anastomosis_granulovirus_B

helicase-1__YP_009506018__Clostera_anastomosis_granulovirus_B__1986290

Identity

Accession:: YP_009506018 ↗
Protein ID:: helicase-1
Kingdom:: euk

Quality

76.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Clostera_anastomosis_granulovirus_B

TaxID: 1986290

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 776-1038

PDB

Domain cluster: rep: SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00013__D158-375

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	408.5	8.80e-122	100.0%	20.5%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1u0jA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.71	52.0	5.85e-01	88.2%	94.7%
3eccA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	35.0	4.41e-01	70.7%	100.0%
1g19A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	39.0	4.27e-01	85.2%	88.8%
1dekA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	26.0	3.65e-01	71.5%	100.0%

ECOD (25)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3954608	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.81	66.0	6.67e-01	90.5%	83.8%
4959586	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.80	65.0	6.41e-01	90.5%	79.2%
3945876	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.80	65.0	6.58e-01	92.0%	83.8%
5081314	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.79	64.0	6.45e-01	90.1%	83.1%
4973289	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.78	65.0	6.52e-01	90.5%	84.5%
5022020	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.78	65.0	6.53e-01	90.5%	85.7%
5035042	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.77	67.0	6.63e-01	90.1%	85.8%
3253892	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.75	55.0	6.31e-01	80.6%	100.0%
5011495	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.72	49.0	5.59e-01	90.1%	90.0%
5058121	2004.1.1.1224 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF31144	0.67	59.0	5.59e-01	90.9%	81.7%
5017850	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.67	39.0	5.11e-01	71.5%	100.0%
3601515	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.62	37.0	3.87e-01	87.5%	61.2%
4994590	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.62	48.0	5.36e-01	81.7%	100.0%
3698933	2004.1.1.46 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM	0.60	49.0	4.84e-01	84.4%	89.3%
4986023	2004.1.1.254 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › BrxL_ATPase	0.60	55.0	5.15e-01	97.7%	95.0%
4216434	2004.1.1.254 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › BrxL_ATPase	0.59	54.0	4.93e-01	97.7%	88.2%
4941848	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.58	48.0	4.30e-01	87.5%	82.7%
4968232	2004.1.1.66 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2	0.56	42.0	4.32e-01	80.2%	79.6%
3944366	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.55	25.0	3.27e-01	73.0%	74.8%
3290930	2004.1.1.156 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5	0.53	49.0	4.79e-01	97.3%	94.3%
3201839	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.51	23.0	3.03e-01	76.0%	72.9%
4980632	2004.1.1.1200 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF835	0.51	32.0	3.91e-01	81.0%	96.5%
4026391	2004.1.1.30 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C	0.51	29.0	3.36e-01	85.6%	75.1%
3472181	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.50	39.0	4.30e-01	80.2%	96.8%
3498029	2004.1.1.135 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1	0.50	37.0	4.15e-01	83.7%	98.5%

D2 high residues 1045-1131

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	72.1	3.00e-20	100.0%	7.6%

D3 medium residues 1-154

PDB

Domain cluster: rep: DNA_helicase__YP_008378412__Choristoneura_rosaceana_nucleopolyhedrovirus__58094__D1-62_93-207

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	90.1	1.10e-25	100.0%	13.2%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k13X00	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.55	32.0	3.80e-01	94.8%	84.5%
4limA00	3.90.920.10	Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain	0.52	47.0	3.56e-01	100.0%	95.5%
3c9aA02	2.20.20.150	Mainly Beta › Single Sheet › Anthopleurin-A ›	0.52	17.0	2.72e-01	86.4%	73.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3972568	11.1.1.994 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30427	0.50	25.0	3.27e-01	96.1%	84.7%

D4 medium residues 155-259

PDB

D5 medium residues 281-433

PDB

Domain cluster: rep: DNA-helicase-2__YP_009182280__Diatraea_saccharalis_granulovirus__1675862__D269-385

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	110.1	9.80e-32	99.4%	13.3%

D6 medium residues 434-495_515-544

PDB

D7 medium residues 617-775

PDB

Domain cluster: rep: DNAhel-1__YP_009121868__Spodoptera_frugiperda_granulovirus__307454__D604-747

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	98.9	2.30e-28	97.5%	11.8%