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helicase-1

Euk-Vir

Trichoplusia_ni_granulovirus_LBIV-12

helicase-1__YP_009506161__Trichoplusia_ni_granulovirus_LBIV-12__1916701

Identity

Accession:: YP_009506161 ↗
Protein ID:: helicase-1
Kingdom:: euk

Quality

79.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Trichoplusia_ni_granulovirus_LBIV-12

TaxID: 1916701

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-142

PDB

Domain cluster: rep: P143__YP_009116998__Pseudoplusia_includens_SNPV_IE__1592335__D21-65_78-129_154-167

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	67.4	7.50e-19	84.7%	8.5%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ed8A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	26.0	3.22e-01	90.1%	65.1%
1mw7A03	3.30.70.980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain	0.57	32.0	3.96e-01	71.8%	93.3%
2k13X00	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.55	34.0	3.75e-01	100.0%	76.7%
2zuoA09	2.30.30.570	Mainly Beta › Roll › SH3 type barrels. ›	0.55	22.0	3.17e-01	74.8%	77.8%
2k2dA00	2.20.28.10	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 ›	0.53	21.0	3.27e-01	83.2%	97.9%
4dohE02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	25.0	2.79e-01	90.1%	55.7%
1x60A01	3.30.70.1070	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat	0.52	29.0	3.66e-01	73.3%	98.6%
5vqjA00	2.60.120.180	Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain	0.50	44.0	3.83e-01	100.0%	91.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2756948	862.1.1.1 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S	0.64	55.0	5.00e-01	94.7%	84.6%
4004207	11.1.4.76 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_5th	0.60	26.0	3.24e-01	89.3%	65.0%
5060834	3986.2.1.0 ↗	a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd	0.56	25.0	3.56e-01	89.3%	90.0%
3789849	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	24.0	3.31e-01	88.5%	91.7%

D2 high residues 161-243

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

D3 high residues 1044-1156

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	48.7	3.50e-13	95.6%	8.9%

D4 medium residues 288-446

PDB

Domain cluster: rep: DNA-helicase-2__YP_009182280__Diatraea_saccharalis_granulovirus__1675862__D269-385

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	36.9	1.20e-09	89.9%	10.0%

D5 medium residues 542-567_767-845

PDB

Domain cluster: rep: DNA_helicase-1__YP_003422441__Pseudalatia_unipuncta_granulovirus__36355__D539-556_771-830

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	81.3	4.80e-23	93.3%	6.3%

D6 medium residues 568-763

PDB

Domain cluster: rep: DNAhel-1__YP_009121868__Spodoptera_frugiperda_granulovirus__307454__D604-747

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	37.6	7.40e-10	99.5%	16.5%

D7 medium residues 846-995

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	162.0	2.20e-47	100.0%	11.6%
PF19263.6	DUF5906	30.6	6.70e-07	74.0%	92.9%