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helicase-2

Euk-Vir

Artogeia_rapae_granulovirus

helicase-2__YP_003429432__Artogeia_rapae_granulovirus__362830

Identity

Accession:
YP_003429432 ↗
Protein ID:
helicase-2
Kingdom:
euk

Quality

82.8 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Betabaculovirus_arrapae

TaxID: 362830

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 268-377
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 42.0 5.52e-01 97.3% 93.7%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 42.0 5.23e-01 99.1% 83.1%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 43.0 5.64e-01 93.6% 96.8%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.77 48.0 5.89e-01 98.2% 100.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 40.0 5.42e-01 96.4% 96.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 38.0 4.96e-01 73.6% 89.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 43.0 5.44e-01 95.5% 98.5%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.71 39.0 5.08e-01 95.5% 98.3%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.70 41.0 4.31e-01 97.3% 64.3%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 5.51e-01 93.6% 97.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 4.79e-01 71.8% 92.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.64 46.0 4.90e-01 81.8% 86.3%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.98e-01 96.4% 90.9%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.10e-01 97.3% 80.2%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.56 41.0 3.43e-01 76.4% 95.2%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.13e-01 78.2% 87.4%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.75e-01 96.4% 61.9%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 39.0 3.24e-01 72.7% 47.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 38.0 3.04e-01 72.7% 53.3%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.78e-01 98.2% 72.3%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.50 38.0 3.70e-01 78.2% 91.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486327 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 42.0 5.78e-01 94.5% 88.3%
3651961 4.1.1.251 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 0.87 44.0 6.21e-01 70.9% 100.0%
4660107 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.84 42.0 5.78e-01 97.3% 91.7%
3740753 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.83 43.0 5.56e-01 90.0% 86.2%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 42.0 5.92e-01 94.5% 100.0%
3830187 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 42.0 5.83e-01 95.5% 100.0%
4357819 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.81 44.0 5.49e-01 98.2% 84.3%
3597575 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 77.0 6.79e-01 99.1% 97.3%
3330943 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.81 41.0 5.78e-01 94.5% 100.0%
3357239 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.81 77.0 6.66e-01 100.0% 79.1%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.81 76.0 7.28e-01 99.1% 98.4%
3169607 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.80 42.0 5.13e-01 99.1% 77.3%
4101587 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.80 72.0 7.38e-01 97.3% 98.1%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.80 43.0 5.45e-01 90.9% 85.7%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 43.0 5.04e-01 73.6% 73.8%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.79 46.0 4.53e-01 74.5% 55.7%
2726885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 73.0 7.31e-01 98.2% 96.5%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.78 42.0 5.28e-01 99.1% 84.3%
3385654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 72.0 6.95e-01 96.4% 98.3%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 52.0 6.17e-01 99.1% 100.0%
3229601 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.77 40.0 5.35e-01 98.2% 93.3%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.76 41.0 5.57e-01 96.4% 100.0%
3456496 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.75 43.0 4.28e-01 95.5% 54.8%
3221094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 69.0 6.78e-01 97.3% 100.0%
5033242 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.73 42.0 4.77e-01 97.3% 74.1%
3393319 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 44.0 4.45e-01 76.4% 60.9%
4205717 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 42.0 4.90e-01 95.5% 80.0%
3999725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 43.0 4.89e-01 77.3% 77.6%
3759446 4.1.1.73 ↗ beta barrels › SH3 › SH3 › SH3 › Cul7 0.72 47.0 5.19e-01 74.5% 81.1%
5068429 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.72 41.0 4.28e-01 70.0% 60.6%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 43.0 5.30e-01 95.5% 95.7%
4977702 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.71 41.0 4.70e-01 97.3% 75.3%
3710007 4.1.1.372 ↗ beta barrels › SH3 › SH3 › SH3 › PF30207 0.71 63.0 6.12e-01 94.5% 100.0%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 43.0 5.22e-01 94.5% 91.9%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 42.0 5.30e-01 95.5% 100.0%
4098870 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.70 44.0 4.78e-01 100.0% 73.7%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 42.0 5.05e-01 71.8% 90.4%
4947175 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.70 41.0 4.55e-01 95.5% 72.2%
5038850 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.69 40.0 4.46e-01 70.0% 71.1%
4253108 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.69 41.0 4.56e-01 97.3% 73.9%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 45.0 5.43e-01 87.3% 98.7%
5005903 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.68 40.0 4.26e-01 70.0% 65.0%
4885908 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.68 41.0 4.33e-01 70.9% 67.3%
1144815 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.67 47.0 5.49e-01 74.5% 100.0%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 44.0 5.01e-01 96.4% 88.2%
3592525 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.37e-01 85.5% 88.2%
5046193 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.65 40.0 4.43e-01 98.2% 75.6%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.65 41.0 4.81e-01 96.4% 93.3%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.64 47.0 4.97e-01 81.8% 84.0%
4932696 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.63 46.0 4.79e-01 81.8% 83.0%
3713629 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.62 54.0 3.55e-01 92.7% 56.7%
5037772 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.61 42.0 4.24e-01 70.9% 75.2%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 43.0 4.78e-01 97.3% 90.0%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 46.0 4.92e-01 91.8% 91.6%
3244497 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.59 45.0 4.05e-01 80.0% 78.0%
3498983 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 3.37e-01 92.7% 59.5%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.59 44.0 3.94e-01 79.1% 78.1%
4029093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 3.67e-01 86.4% 52.3%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.58 45.0 4.00e-01 80.0% 77.3%
3933047 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.58 45.0 3.90e-01 80.0% 83.1%
3651964 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.54 47.0 4.59e-01 91.8% 93.3%
3366578 4.1.1.325 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.54 47.0 4.59e-01 92.7% 94.2%
3585492 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.52 48.0 4.85e-01 100.0% 97.3%
3487003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.68e-01 98.2% 65.2%
3169706 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.52 43.0 3.89e-01 100.0% 65.3%
D2 medium residues 54-205_425-446
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF05970.21 best PIF1 88.3 8.40e-25 94.2% 77.1%
PF13604.13 AAA_30 42.0 1.30e-10 90.8% 58.1%
PF13245.13 AAA_19 43.7 4.20e-11 70.1% 89.5%