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helicase-2
Euk-VirPlodia_interpunctella_granulovirus
helicase-2__YP_009330243__Plodia_interpunctella_granulovirus__262175
Identity
- Accession:
- YP_009330243 ↗
- Protein ID:
- helicase-2
- Kingdom:
- euk
Quality
81.0
mean pLDDT
Taxonomy
TaxID: 262175
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-201_428-437
Domain cluster:
rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05970.21 best | PIF1 | 79.6 | 3.60e-22 | 100.0% | 83.4% |
| PF13604.13 | AAA_30 | 39.3 | 8.30e-10 | 86.6% | 59.2% |
| PF13245.13 | AAA_19 | 41.2 | 2.50e-10 | 76.2% | 93.3% |
D2
medium
residues 230-250_384-426
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5rl9B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 62.0 | 4.75e-01 | 100.0% | 75.2% |
| 3jb9X01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 58.0 | 4.01e-01 | 100.0% | 59.8% |
| 1yksA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 56.0 | 4.17e-01 | 100.0% | 90.6% |
| 1w36D02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 55.0 | 3.82e-01 | 100.0% | 56.0% |
| 2gk6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 54.0 | 3.65e-01 | 100.0% | 53.6% |
| 2zpaA01 | 3.40.50.11040 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 54.0 | 4.02e-01 | 100.0% | 58.7% |
| 3vkwA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 53.0 | 4.22e-01 | 98.4% | 88.7% |
| 5djsA02 | 3.40.50.11380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 44.0 | 3.17e-01 | 75.0% | 59.6% |
| 1jeoA00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.62 | 51.0 | 3.78e-01 | 93.8% | 53.1% |
| 4pneA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 52.0 | 3.47e-01 | 96.9% | 51.9% |
| 6jimB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 52.0 | 4.14e-01 | 100.0% | 82.5% |
| 1rifA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 51.0 | 3.79e-01 | 100.0% | 71.4% |
| 1gm5A05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 51.0 | 3.94e-01 | 100.0% | 87.0% |
| 2oztA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.60 | 51.0 | 3.69e-01 | 100.0% | 97.0% |
| 3e18A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 45.0 | 3.69e-01 | 85.9% | 74.3% |
| 2zpaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 51.0 | 4.09e-01 | 100.0% | 80.9% |
| 2avdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 49.0 | 3.54e-01 | 100.0% | 66.7% |
| 1cqxA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.59 | 45.0 | 3.55e-01 | 84.4% | 95.1% |
| 8k1fC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 48.0 | 3.53e-01 | 95.3% | 74.0% |
| 3fhlA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 44.0 | 3.58e-01 | 85.9% | 74.6% |
| 2dplA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 43.0 | 3.23e-01 | 81.2% | 39.6% |
| 3cvoA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.43e-01 | 96.9% | 73.2% |
| 2bdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 38.0 | 2.94e-01 | 73.4% | 86.0% |
| 2yx1A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 45.0 | 3.42e-01 | 95.3% | 64.4% |
| 3ixqA01 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 45.0 | 3.58e-01 | 95.3% | 81.0% |
| 3x0dA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 43.0 | 3.42e-01 | 90.6% | 83.4% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 43.0 | 3.38e-01 | 95.3% | 71.5% |
| 6lfnA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 43.0 | 3.31e-01 | 92.2% | 61.1% |
| 4df0A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 45.0 | 3.30e-01 | 100.0% | 91.5% |
| 3lpmA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 44.0 | 3.15e-01 | 95.3% | 59.1% |
| 1v4vA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 41.0 | 3.23e-01 | 89.1% | 45.2% |
| 2h00B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 43.0 | 3.20e-01 | 100.0% | 62.4% |
| 1s4nB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 36.0 | 2.34e-01 | 71.9% | 18.5% |
| 3f4aA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.53 | 44.0 | 3.54e-01 | 100.0% | 68.8% |
| 6imeA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.52 | 39.0 | 2.71e-01 | 85.9% | 62.0% |
| 7y11A01 | 3.40.525.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain | 0.52 | 40.0 | 2.95e-01 | 89.1% | 65.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610095 | 2004.1.1.298 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase | 0.88 | 82.0 | 5.87e-01 | 100.0% | 65.3% |
| 3385675 | 2004.1.1.298 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase | 0.87 | 81.0 | 6.01e-01 | 100.0% | 65.5% |
| 3890170 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 81.0 | 6.08e-01 | 100.0% | 59.3% |
| 3363137 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 80.0 | 6.09e-01 | 100.0% | 63.0% |
| 3716782 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 80.0 | 6.17e-01 | 100.0% | 62.3% |
| 3891480 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.85 | 80.0 | 4.83e-01 | 100.0% | 23.1% |
| 3600234 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.85 | 79.0 | 5.66e-01 | 100.0% | 68.8% |
| 3267758 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 74.0 | 5.66e-01 | 100.0% | 64.4% |
| 3882209 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 74.0 | 5.65e-01 | 100.0% | 63.0% |
| 4610954 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 74.0 | 5.93e-01 | 100.0% | 70.4% |
| 3777141 | 2004.1.1.298 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase | 0.79 | 73.0 | 5.47e-01 | 100.0% | 58.6% |
| 3789466 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.78 | 72.0 | 5.31e-01 | 100.0% | 56.1% |
| 3164108 | 2004.1.1.161 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TmcA_N | 0.64 | 56.0 | 4.53e-01 | 100.0% | 80.8% |
| 3788919 | 2004.1.1.505 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_30 | 0.63 | 54.0 | 3.45e-01 | 100.0% | 66.9% |
| 1030910 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.62 | 52.0 | 3.82e-01 | 100.0% | 71.8% |
| 2512657 | 2004.1.1.62 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 | 0.62 | 52.0 | 4.02e-01 | 100.0% | 74.2% |
| 4970836 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 53.0 | 3.77e-01 | 100.0% | 70.7% |
| 5044361 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.59 | 48.0 | 3.34e-01 | 98.4% | 58.5% |
| 3320919 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.59 | 48.0 | 3.38e-01 | 96.9% | 67.1% |
| 5036681 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.59 | 49.0 | 3.26e-01 | 98.4% | 44.0% |
| 5073032 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.58 | 49.0 | 3.39e-01 | 100.0% | 60.5% |
| 5023886 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.58 | 47.0 | 3.22e-01 | 96.9% | 56.0% |
| 4976096 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.58 | 48.0 | 3.02e-01 | 95.3% | 35.9% |
| 3394450 | 2496.1.1.1 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO | 0.58 | 41.0 | 3.01e-01 | 79.7% | 56.3% |
| 4358652 | 2003.1.5.151 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 | 0.57 | 46.0 | 3.04e-01 | 95.3% | 67.3% |
| 4971492 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.57 | 47.0 | 2.91e-01 | 95.3% | 32.9% |
| 4420565 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.56 | 46.0 | 3.33e-01 | 98.4% | 56.7% |
| 4049858 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.56 | 42.0 | 2.82e-01 | 84.4% | 66.1% |
| 4645737 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.56 | 46.0 | 3.36e-01 | 100.0% | 74.8% |
| 4336917 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.55 | 46.0 | 3.41e-01 | 100.0% | 61.0% |
| 3954027 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.55 | 45.0 | 3.17e-01 | 100.0% | 62.7% |
| 3588453 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.55 | 43.0 | 3.17e-01 | 90.6% | 34.8% |
| 4994751 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.54 | 43.0 | 2.99e-01 | 96.9% | 45.5% |
| 3254211 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.52 | 39.0 | 2.46e-01 | 84.4% | 18.8% |
D3
medium
residues 251-383
Domain cluster:
rep: helicase-2__YP_003429432__Artogeia_rapae_granulovirus__362830__D268-377