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helicase-2

Euk-Vir

Mythimna_unipuncta_granulovirus_B

helicase-2__YP_009345848__Mythimna_unipuncta_granulovirus_B__2169746

Identity

Accession:
YP_009345848 ↗
Protein ID:
helicase-2
Kingdom:
euk

Quality

83.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Betabaculovirus_altermyunipunctae

TaxID: 2169746

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-198_432-441
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (4)
AccessionNameScoreE-valueQ covHMM cov
PF05970.21 best PIF1 65.6 7.20e-18 99.4% 74.9%
PF01443.25 Viral_helicase1 22.4 1.40e-04 94.3% 49.6%
PF13604.13 AAA_30 37.0 4.30e-09 80.2% 57.1%
PF13245.13 AAA_19 35.7 1.30e-08 76.4% 88.1%
D2 medium residues 208-248_377-431
PDB
Domain cluster: rep: helicase_2__YP_010087709__Homarus_gammarus_nudivirus__2509616__D258-315_421-469
D3 medium residues 249-376
PDB
Domain cluster: rep: helicase-2__YP_003429432__Artogeia_rapae_granulovirus__362830__D268-377
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 37.0 4.99e-01 86.7% 81.7%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.80 44.0 5.84e-01 91.4% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 34.0 4.88e-01 78.9% 85.7%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 36.0 5.29e-01 86.7% 98.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 33.0 4.72e-01 100.0% 85.9%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 35.0 5.01e-01 91.4% 92.2%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.72 36.0 4.07e-01 96.1% 62.2%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 41.0 5.23e-01 80.5% 93.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 36.0 4.53e-01 89.1% 78.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 36.0 4.81e-01 79.7% 89.9%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 34.0 3.88e-01 84.4% 60.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 34.0 4.76e-01 82.8% 98.3%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 32.0 3.94e-01 84.4% 71.1%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.63 40.0 4.59e-01 70.3% 85.3%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.68e-01 84.4% 87.9%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 30.0 3.55e-01 82.0% 72.8%
7l0jB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 26.0 3.02e-01 80.5% 62.9%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 30.0 3.36e-01 81.2% 72.8%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4098445 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.90 36.0 5.49e-01 82.0% 85.0%
4660107 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.89 35.0 5.35e-01 83.6% 83.3%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.88 37.0 5.12e-01 82.8% 75.7%
3486327 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 36.0 5.37e-01 82.0% 85.0%
4357819 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.87 37.0 5.10e-01 84.4% 77.1%
3169607 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.86 36.0 4.78e-01 85.9% 70.7%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 37.0 5.81e-01 82.8% 100.0%
3830187 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.84 36.0 5.58e-01 82.0% 96.4%
3740753 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.84 37.0 5.32e-01 78.9% 86.2%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.83 37.0 5.00e-01 85.9% 78.6%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 36.0 5.54e-01 82.8% 98.2%
3581896 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.82 38.0 5.44e-01 79.7% 90.8%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 34.0 5.25e-01 82.0% 94.5%
4101587 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.81 64.0 7.09e-01 91.4% 100.0%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 36.0 5.41e-01 81.2% 96.7%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.79 36.0 5.29e-01 79.7% 95.0%
4284118 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 46.0 5.96e-01 89.8% 100.0%
1746358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 64.0 7.01e-01 93.8% 100.0%
2726885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 67.0 7.10e-01 93.8% 100.0%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 45.0 5.86e-01 90.6% 98.7%
3229601 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 35.0 5.14e-01 86.7% 93.3%
3597575 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 69.0 6.51e-01 93.8% 99.3%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.77 36.0 5.31e-01 82.8% 98.3%
3598285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 42.0 5.56e-01 85.2% 98.6%
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.76 39.0 5.49e-01 82.0% 100.0%
3022070 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.76 65.0 6.91e-01 93.8% 100.0%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 38.0 3.92e-01 81.2% 52.5%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.75 41.0 5.55e-01 84.4% 100.0%
3486495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 38.0 3.37e-01 98.4% 36.6%
3723061 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.56e-01 93.0% 100.0%
3023952 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 64.0 6.78e-01 90.6% 100.0%
3357239 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.74 65.0 5.99e-01 91.4% 79.1%
3714141 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.74 62.0 6.05e-01 87.5% 100.0%
3172952 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.68e-01 91.4% 99.4%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.74 65.0 6.65e-01 92.2% 99.2%
3385654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 6.69e-01 90.6% 100.0%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 37.0 5.09e-01 99.2% 95.4%
4347063 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.74 67.0 6.57e-01 94.5% 100.0%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 33.0 4.87e-01 88.3% 98.2%
3955235 4.1.1.183 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4926 0.72 38.0 4.83e-01 81.2% 83.7%
3710007 4.1.1.372 ↗ beta barrels › SH3 › SH3 › SH3 › PF30207 0.72 57.0 5.87e-01 82.0% 99.2%
3511277 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 45.0 5.52e-01 82.8% 100.0%
None — 0.71 56.0 3.83e-01 97.7% 26.0%
3759446 4.1.1.73 ↗ beta barrels › SH3 › SH3 › SH3 › Cul7 0.71 42.0 5.06e-01 98.4% 85.6%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 36.0 5.01e-01 82.0% 98.5%
3998645 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 35.0 4.81e-01 87.5% 93.8%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 38.0 4.95e-01 98.4% 93.2%
3221094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 6.31e-01 90.6% 100.0%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 38.0 4.88e-01 96.1% 93.2%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 36.0 4.80e-01 100.0% 92.9%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.69 33.0 4.55e-01 83.6% 90.8%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 38.0 4.96e-01 89.1% 100.0%
3278853 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 35.0 4.75e-01 89.8% 100.0%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 39.0 4.72e-01 98.4% 91.8%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 37.0 4.70e-01 99.2% 98.7%
4952455 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.56 30.0 3.60e-01 82.0% 75.3%
3928050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 3.80e-01 70.3% 68.1%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.54 34.0 3.81e-01 82.8% 80.0%
3302817 4.1.1.362 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2, KOW7_SPT5 0.54 41.0 4.45e-01 100.0% 91.7%
4945827 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 31.0 3.60e-01 81.2% 78.9%
4987744 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.53 37.0 3.65e-01 100.0% 66.7%
4200330 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.53 40.0 4.11e-01 99.2% 80.0%
3665882 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.50 35.0 3.44e-01 70.3% 68.9%