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helicase-primase_ATPase_subunit
Euk-VirPhascolarctid_gammaherpesvirus_1
helicase-primase_ATPase_subunit__YP_010087484__Phascolarctid_gammaherpesvirus_1__2249313
Identity
- Accession:
- YP_010087484 ↗
- Protein ID:
- helicase-primase_ATPase_subunit
- Kingdom:
- euk
Quality
82.7
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Manticavirus›
Phascolarctid_gammaherpesvirus_1
TaxID: 2249313
Cluster
View cluster (90 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 44-115_166-193_209-304_763-785
Domain cluster:
rep: ORF35__NP_733888__Callitrichine_gammaherpesvirus_3__106331__D45-78_114-298
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 31.3 | 2.50e-07 | 69.0% | 47.4% |
| PF02689.21 | Herpes_Helicase | 174.9 | 3.20e-51 | 66.7% | 17.1% |
| PF02689.21 | Herpes_Helicase | 97.4 | 8.60e-28 | 34.7% | 9.4% |
D2
medium
residues 116-165_194-208
Domain cluster:
rep: helicase-primase_helicase_subunit__YP_007969770__Elephantid_betaherpesvirus_1__146015__D128-178
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02689.21 best | Herpes_Helicase | 28.8 | 4.50e-07 | 78.5% | 5.8% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ka1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 43.0 | 3.09e-01 | 95.4% | 66.7% |
| 7e24A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 44.0 | 3.01e-01 | 100.0% | 65.3% |
D3
medium
residues 338-366_706-759
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 22.3 | 1.50e-04 | 87.9% | 19.7% |
| PF02689.21 | Herpes_Helicase | 89.5 | 2.10e-25 | 80.7% | 7.9% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5rl9B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.84 | 67.0 | 5.37e-01 | 98.8% | 46.3% |
| 3upuA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.81 | 65.0 | 5.51e-01 | 91.6% | 53.8% |
| 1w36D03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 73.0 | 5.60e-01 | 100.0% | 54.3% |
| 3e1sA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 69.0 | 5.68e-01 | 100.0% | 56.0% |
| 3jb9X01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 69.0 | 4.95e-01 | 100.0% | 36.7% |
| 6jimB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 63.0 | 5.33e-01 | 98.8% | 57.9% |
| 3u4qA04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 66.0 | 4.54e-01 | 98.8% | 53.0% |
| 3rc3A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 63.0 | 5.18e-01 | 98.8% | 79.3% |
| 2hyiC02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 61.0 | 4.82e-01 | 98.8% | 64.7% |
| 7pliF02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 61.0 | 4.93e-01 | 98.8% | 70.9% |
| 3b85A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 60.0 | 4.56e-01 | 98.8% | 53.5% |
| 2o3jB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 52.0 | 3.95e-01 | 97.6% | 62.9% |
| 3szuA03 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.60 | 49.0 | 4.67e-01 | 95.2% | 76.0% |
| 1w36C01 | 3.40.50.10930 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 52.0 | 3.89e-01 | 98.8% | 79.3% |
| 2esrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 49.0 | 4.10e-01 | 97.6% | 68.1% |
| 1zkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 50.0 | 4.07e-01 | 100.0% | 64.0% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.57 | 49.0 | 4.31e-01 | 98.8% | 76.7% |
| 1x19A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 48.0 | 3.99e-01 | 98.8% | 67.5% |
| 3rqiA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 48.0 | 4.23e-01 | 98.8% | 66.1% |
| 2abqA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 48.0 | 3.32e-01 | 100.0% | 60.7% |
| 3fdxA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 45.0 | 3.95e-01 | 92.8% | 95.3% |
| 2zpaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 47.0 | 4.03e-01 | 98.8% | 61.0% |
| 4narA01 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.53 | 44.0 | 3.31e-01 | 100.0% | 86.7% |
| 3ejfA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.53 | 45.0 | 3.72e-01 | 98.8% | 80.1% |
| 3ejgA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.53 | 45.0 | 3.70e-01 | 98.8% | 78.8% |
| 1e8cB03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.52 | 40.0 | 3.43e-01 | 85.5% | 59.2% |
| 3ksmA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 44.0 | 3.76e-01 | 100.0% | 74.0% |
| 1eluA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 42.0 | 3.12e-01 | 98.8% | 39.8% |
| 2x5nA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.50 | 43.0 | 3.46e-01 | 100.0% | 90.5% |
| 4yv7A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 42.0 | 3.56e-01 | 100.0% | 80.9% |
| 6acsA00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.50 | 42.0 | 3.13e-01 | 95.2% | 81.3% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600234 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.90 | 67.0 | 5.11e-01 | 98.8% | 37.6% |
| 3716782 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.89 | 65.0 | 5.42e-01 | 98.8% | 47.7% |
| 3882209 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.88 | 66.0 | 5.50e-01 | 98.8% | 48.1% |
| 3682824 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.88 | 62.0 | 5.11e-01 | 95.2% | 44.4% |
| 3658525 | 2004.1.1.62 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 | 0.87 | 67.0 | 5.47e-01 | 98.8% | 47.1% |
| 3777141 | 2004.1.1.298 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase | 0.87 | 66.0 | 5.32e-01 | 98.8% | 44.8% |
| 3601738 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 66.0 | 5.67e-01 | 100.0% | 52.8% |
| 3682367 | 2004.1.1.496 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 | 0.87 | 66.0 | 5.44e-01 | 98.8% | 48.1% |
| 3890170 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 66.0 | 5.42e-01 | 98.8% | 47.1% |
| 3591776 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 64.0 | 5.11e-01 | 98.8% | 41.9% |
| 3719002 | 2004.1.1.203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 | 0.86 | 71.0 | 5.89e-01 | 98.8% | 53.3% |
| 3363137 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 66.0 | 5.49e-01 | 98.8% | 49.6% |
| 3267758 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.84 | 68.0 | 5.61e-01 | 98.8% | 51.9% |
| 3596401 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.83 | 67.0 | 5.56e-01 | 98.8% | 51.9% |
| 3242523 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.82 | 68.0 | 5.77e-01 | 97.6% | 56.2% |
| 3589167 | 2004.1.1.62 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 | 0.81 | 68.0 | 5.59e-01 | 92.8% | 52.1% |
| 3662519 | 2004.1.1.62 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 | 0.80 | 51.0 | 4.77e-01 | 81.9% | 54.0% |
| 3760903 | 2004.1.1.203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 | 0.79 | 69.0 | 5.26e-01 | 92.8% | 53.1% |
| 3372829 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 70.0 | 5.65e-01 | 100.0% | 53.1% |
| 5080800 | 2004.1.1.186 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 | 0.79 | 73.0 | 5.27e-01 | 98.8% | 52.4% |
| 3370015 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 69.0 | 5.20e-01 | 97.6% | 42.7% |
| 3372759 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.79 | 68.0 | 4.56e-01 | 97.6% | 27.8% |
| 3807611 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 67.0 | 5.27e-01 | 97.6% | 47.7% |
| 3385675 | 2004.1.1.298 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_Helicase | 0.79 | 68.0 | 5.52e-01 | 100.0% | 52.4% |
| 3682236 | 2004.1.1.496 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 | 0.78 | 72.0 | 5.49e-01 | 97.6% | 55.3% |
| 3648251 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.78 | 72.0 | 5.09e-01 | 97.6% | 63.6% |
| 3926523 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.78 | 70.0 | 5.46e-01 | 97.6% | 48.5% |
| 3558535 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 67.0 | 5.12e-01 | 92.8% | 52.8% |
| 3671414 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 72.0 | 5.44e-01 | 98.8% | 60.6% |
| 3603695 | 2004.1.1.496 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 | 0.77 | 73.0 | 5.42e-01 | 100.0% | 44.9% |
| 3653111 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 65.0 | 6.47e-01 | 97.6% | 86.9% |
| 3676955 | 2004.1.1.203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 | 0.76 | 71.0 | 5.39e-01 | 97.6% | 53.2% |
| 3777175 | 2004.1.1.203 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 | 0.76 | 66.0 | 5.12e-01 | 100.0% | 45.3% |
| 3561762 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 65.0 | 4.92e-01 | 92.8% | 46.3% |
| 3362146 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.76 | 66.0 | 4.82e-01 | 97.6% | 38.0% |
| 3796494 | 2004.1.1.186 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 | 0.75 | 70.0 | 4.86e-01 | 100.0% | 34.0% |
| 3683589 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.75 | 69.0 | 4.29e-01 | 97.6% | 22.8% |
| 3680771 | 2004.1.1.135 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 | 0.74 | 69.0 | 4.69e-01 | 97.6% | 35.7% |
| 3656784 | 2004.1.1.62 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 | 0.74 | 68.0 | 5.14e-01 | 97.6% | 50.0% |
| None | — | 0.74 | 70.0 | 4.71e-01 | 100.0% | 34.8% | |
| 3374069 | 2004.1.1.186 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 | 0.74 | 68.0 | 5.87e-01 | 100.0% | 71.2% |
| 4331804 | 2004.1.1.186 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 | 0.73 | 68.0 | 5.04e-01 | 100.0% | 42.6% |
| 3874017 | 2004.1.1.496 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1, UvrD_C_2 | 0.72 | 67.0 | 5.10e-01 | 100.0% | 48.3% |
| 4261807 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.71 | 63.0 | 4.65e-01 | 98.8% | 72.0% |
| 3645109 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 64.0 | 3.74e-01 | 97.6% | 14.7% |
| 5023408 | 2004.1.1.89 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PhoH | 0.67 | 60.0 | 4.45e-01 | 98.8% | 56.7% |
| 3959799 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 59.0 | 4.30e-01 | 98.8% | 51.3% |
| 3980599 | 2004.1.1.89 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PhoH | 0.65 | 57.0 | 4.11e-01 | 98.8% | 49.0% |
| 3271634 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.61 | 54.0 | 3.99e-01 | 98.8% | 50.0% |
| 4980547 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.59 | 51.0 | 3.62e-01 | 100.0% | 67.7% |
| 5013470 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.58 | 50.0 | 3.84e-01 | 98.8% | 54.5% |
| 4939526 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.55 | 45.0 | 4.09e-01 | 92.8% | 91.5% |
| 3299538 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.55 | 46.0 | 3.55e-01 | 95.2% | 83.0% |
| 3791564 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 47.0 | 4.03e-01 | 98.8% | 64.3% |
| 4937547 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.51 | 43.0 | 3.99e-01 | 97.6% | 81.8% |
| 3281343 | 2004.1.1.189 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 | 0.51 | 39.0 | 3.16e-01 | 85.5% | 94.3% |
D4
medium
residues 367-440_685-705
Domain cluster:
rep: helicase-primase_helicase_subunit__NP_045354__Bovine_alphaherpesvirus_1__10320__D392-469_736-760
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02689.21 best | Herpes_Helicase | 82.4 | 2.90e-23 | 81.0% | 9.4% |
D5
medium
residues 441-487_509-525_562-684
Domain cluster:
rep: helicase-primase_helicase_subunit__YP_009010991__Chimpanzee_herpesvirus_strain_105640__332937__D496-582_686-776
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02689.21 best | Herpes_Helicase | 112.0 | 3.20e-32 | 75.4% | 16.0% |
| PF02689.21 | Herpes_Helicase | 45.0 | 5.80e-12 | 30.5% | 5.8% |
D6
medium
residues 488-508_526-561
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.67 | 50.0 | 3.91e-01 | 82.5% | 97.7% |
| 2nyvA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 29.0 | 2.88e-01 | 84.2% | 42.2% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 38.0 | 3.92e-01 | 96.5% | 94.1% |