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helicase-primase_helicase_subunit

Euk-Vir

Human_herpesvirus_5

helicase-primase_helicase_subunit__YP_002608293__Human_herpesvirus_5__10359

Identity

Accession:: YP_002608293 ↗
Protein ID:: helicase-primase_helicase_subunit
Kingdom:: euk

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Human_betaherpesvirus_5

TaxID: 10359

Cluster

View cluster (90 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 109-148_267-300

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_004940120__Aotine_betaherpesvirus_1__50290__D122-162_194-222_285-316

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	58.6	4.60e-16	56.8%	4.7%
PF02689.21	Herpes_Helicase	47.1	1.40e-12	47.3%	4.2%

D2 medium residues 372-413_901-940

PDB

Domain cluster: rep: helicase-primase_ATPase_subunit__YP_010087484__Phascolarctid_gammaherpesvirus_1__2249313__D338-366_706-759

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	56.3	2.30e-15	53.7%	5.2%
PF02689.21	Herpes_Helicase	48.6	4.80e-13	50.0%	4.7%

D3 medium residues 414-494_855-900

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	74.1	9.60e-21	63.8%	9.7%
PF02689.21	Herpes_Helicase	68.9	3.50e-19	37.8%	5.7%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3awmA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.55	39.0	2.77e-01	73.2%	86.7%
7r5mA01	3.30.559.10	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain	0.51	36.0	3.05e-01	73.2%	90.1%
3maeA00	3.30.559.10	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain	0.51	35.0	2.93e-01	70.1%	92.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4022089	323.1.1.0 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases	0.51	35.0	3.21e-01	70.9%	87.6%
4371213	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.51	35.0	3.80e-01	78.7%	89.0%
4962913	323.1.1.1 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh	0.50	36.0	2.99e-01	73.2%	83.0%

D4 medium residues 549-590_744-854

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_009010991__Chimpanzee_herpesvirus_strain_105640__332937__D496-582_686-776

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	122.0	3.20e-35	73.9%	13.7%
PF02689.21	Herpes_Helicase	51.1	8.40e-14	28.1%	5.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1q8iA04	3.90.1600.10	Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain	0.51	27.0	2.47e-01	96.1%	34.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4584002	220.1.1.219 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch	0.51	30.0	3.54e-01	92.2%	83.8%

D5 medium residues 591-634_725-743

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009042021__Bovine_gammaherpesvirus_6__1504288__D477-585

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	39.8	2.30e-10	100.0%	5.7%