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helicase-primase_helicase_subunit

Euk-Vir

Cercopithecine_betaherpesvirus_5

helicase-primase_helicase_subunit__YP_004936070__Cercopithecine_betaherpesvirus_5__50292

Identity

Accession:: YP_004936070 ↗
Protein ID:: helicase-primase_helicase_subunit
Kingdom:: euk

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cercopithecine_betaherpesvirus_5

TaxID: 50292

Cluster

View cluster (90 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 325-380_789-844

PDB

Domain cluster: rep: helicase-primase_ATPase_subunit__YP_010087484__Phascolarctid_gammaherpesvirus_1__2249313__D338-366_706-759

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	90.9	8.00e-26	51.8%	6.7%
PF02689.21	Herpes_Helicase	76.5	1.70e-21	50.0%	6.8%

D2 medium residues 79-137_208-324_845-865

PDB

Domain cluster: rep: ORF35__NP_733888__Callitrichine_gammaherpesvirus_3__106331__D45-78_114-298

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	210.8	4.30e-62	62.9%	14.7%
PF01443.25	Viral_helicase1	23.9	4.80e-05	42.1%	32.5%
PF02689.21	Herpes_Helicase	86.2	2.10e-24	30.5%	7.3%

D3 medium residues 138-207

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	42.8	2.70e-11	100.0%	6.7%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wazA00	1.10.287.910	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › bacterial mercury transporter, merf	0.78	33.0	4.05e-01	78.6%	60.9%
2e5yA02	1.20.5.440	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain	0.60	31.0	3.86e-01	87.1%	80.0%
5mmjo00	1.10.287.10	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding	0.57	33.0	3.31e-01	82.9%	53.3%
1sg7A00	1.10.1740.70	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB	0.56	41.0	4.04e-01	97.1%	74.7%
3b2eF00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.53	33.0	3.53e-01	84.3%	71.0%
2js5A00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.53	35.0	3.49e-01	80.0%	66.2%
3rlfF01	1.20.58.370	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like	0.51	37.0	3.52e-01	88.6%	64.0%
1e3pA02	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.51	38.0	3.66e-01	95.7%	71.1%
1zhcA00	6.10.280.50	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	39.0	3.86e-01	85.7%	90.8%
8igrI01	2.40.270.10	Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6	0.51	36.0	2.84e-01	84.3%	31.8%
3vkgA02	1.20.140.100	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain	0.50	36.0	2.91e-01	77.1%	67.3%
2mpkA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.50	35.0	3.50e-01	97.1%	71.6%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3247204	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.58	34.0	3.67e-01	81.4%	68.3%
4977979	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.58	43.0	3.12e-01	85.7%	57.5%
3588113	5042.1.1.1 ↗	extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA	0.56	36.0	3.71e-01	88.6%	67.7%
3987595	5042.1.1.1 ↗	extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA	0.54	38.0	4.01e-01	92.9%	84.4%
3935107	192.7.1.0 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm	0.53	38.0	3.38e-01	78.6%	70.9%
3229717	3470.1.1.29 ↗	extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › COPIIcoated_ERV	0.52	38.0	3.84e-01	87.1%	78.6%
3597909	5094.1.1.0 ↗	a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like	0.52	39.0	3.37e-01	84.3%	85.0%
4613072	101.1.2.721 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27113	0.51	40.0	3.21e-01	91.4%	80.6%
3678537	150.5.1.86 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › FKS1_dom1	0.50	40.0	2.77e-01	94.3%	63.0%
3231658	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.50	34.0	3.61e-01	70.0%	94.5%

D4 medium residues 385-468_761-788

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__NP_045354__Bovine_alphaherpesvirus_1__10320__D392-469_736-760

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	57.8	7.90e-16	76.8%	9.3%

D5 medium residues 469-491_678-760

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_009137079__Human_alphaherpesvirus_1__10298__D496-518_696-779

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	77.9	6.90e-22	79.2%	10.3%

D6 medium residues 492-556_623-677

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009042021__Bovine_gammaherpesvirus_6__1504288__D477-585

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	56.5	2.00e-15	57.5%	7.8%
PF02689.21	Herpes_Helicase	37.9	8.50e-10	48.3%	6.1%