helicase-primase_helicase_subunit

Euk-Vir

Aotine_betaherpesvirus_1

helicase-primase_helicase_subunit__YP_004940120__Aotine_betaherpesvirus_1__50290

Identity

77.2 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Aotine_betaherpesvirus_1

TaxID: 50290

View cluster (90 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 122-162_194-222_285-316

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	53.4	1.70e-14	52.9%	4.8%
PF02689.21	Herpes_Helicase	50.8	1.10e-13	34.3%	4.1%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3tauA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.66	33.0	3.04e-01	92.2%	36.8%
4wxmB00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.60	27.0	2.52e-01	92.2%	31.0%
3ey7A01	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.57	30.0	2.83e-01	85.3%	43.0%
3sk1C01	3.30.720.120	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.56	31.0	3.92e-01	91.2%	100.0%
3mw8A01	3.40.50.10090	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	25.0	2.42e-01	90.2%	32.5%
2kjzA01	3.30.720.120	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.53	29.0	3.67e-01	88.2%	98.1%
3r4qA01	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.53	33.0	3.01e-01	92.2%	47.7%
3ghjA00	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.51	30.0	2.88e-01	89.2%	50.9%
2heuB01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.50	27.0	2.32e-01	95.1%	29.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5069523	2007.1.13.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase	0.59	24.0	2.41e-01	86.3%	33.3%
4647064	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.56	31.0	3.79e-01	88.2%	90.0%
3676789	2004.1.1.56 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC	0.53	44.0	3.61e-01	87.3%	72.0%
3251565	2007.1.3.1 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg	0.53	24.0	2.24e-01	91.2%	30.4%
2137592	315.1.1.6 ↗	a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_3	0.50	27.0	2.70e-01	92.2%	47.3%

D2 medium residues 387-436

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_068371__Suid_alphaherpesvirus_1__10345__D328-393

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	63.9	1.20e-17	100.0%	5.9%

D3 medium residues 544-562_739-822

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_009137079__Human_alphaherpesvirus_1__10298__D496-518_696-779

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	75.0	5.00e-21	82.5%	10.0%