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helicase-primase_helicase_subunit

Euk-Vir

Wood_mouse_herpesvirus

helicase-primase_helicase_subunit__YP_010085918__Wood_mouse_herpesvirus__432370

Identity

Accession:: YP_010085918 ↗
Protein ID:: helicase-primase_helicase_subunit
Kingdom:: euk

Quality

84.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Wood_mouse_herpesvirus

TaxID: 432370

Cluster

View cluster (90 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-280

PDB

Domain cluster: rep: ORF35__NP_733888__Callitrichine_gammaherpesvirus_3__106331__D45-78_114-298

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	310.1	4.30e-92	100.0%	26.1%

D2 medium residues 11-75

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	75.1	4.90e-21	100.0%	8.2%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6g1nD01	3.30.160.250	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.53	39.0	3.61e-01	100.0%	61.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3225598	207.1.1.130 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8	0.57	42.0	2.45e-01	80.0%	11.8%
4923628	220.1.1.14 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom	0.56	27.0	2.84e-01	96.9%	49.2%
4002633	4967.1.1.0 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases	0.54	44.0	3.42e-01	90.8%	96.0%
1869479	3882.1.1.1 ↗	alpha bundles › Atg17 › Atg17 › Atg17 › ATG17_like	0.54	43.0	2.72e-01	92.3%	55.7%

D3 medium residues 292-342_694-754

PDB

Domain cluster: rep: helicase-primase_ATPase_subunit__YP_010087484__Phascolarctid_gammaherpesvirus_1__2249313__D338-366_706-759

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	83.9	1.10e-23	54.5%	7.2%
PF02689.21	Herpes_Helicase	74.8	5.70e-21	46.4%	6.3%

D4 medium residues 343-440_671-693

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__NP_045354__Bovine_alphaherpesvirus_1__10320__D392-469_736-760

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	103.1	1.60e-29	100.0%	14.7%

D5 medium residues 441-484_559-670

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_009010991__Chimpanzee_herpesvirus_strain_105640__332937__D496-582_686-776

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	120.1	1.10e-34	73.1%	14.2%
PF02689.21	Herpes_Helicase	47.8	8.30e-13	29.5%	5.5%

D6 medium residues 485-558

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	33.8	1.40e-08	100.0%	6.4%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1yzmA00	4.10.860.20	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain	0.61	38.0	4.38e-01	90.5%	100.0%
4fymF00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.58	42.0	3.10e-01	78.4%	92.8%
1qu3A04	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.57	42.0	3.39e-01	79.7%	62.7%
1tu9A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	42.0	3.53e-01	79.7%	65.6%
1y0kA00	3.40.1540.10	Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein pa4535 › Protein of unknown function DUF1780, putative endonuclease	0.52	39.0	3.08e-01	83.8%	68.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4984545	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.59	47.0	4.49e-01	90.5%	100.0%
4011669	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.53	40.0	3.10e-01	79.7%	87.9%