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helicase-primase_helicase_subunit
Euk-VirEquid_alphaherpesvirus_1
helicase-primase_helicase_subunit__YP_053101__Equid_alphaherpesvirus_1__10326
Identity
- Accession:
- YP_053101 ↗
- Protein ID:
- helicase-primase_helicase_subunit
- Kingdom:
- euk
Quality
74.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Equid_alphaherpesvirus_1
TaxID: 10326
Cluster
View cluster (90 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 65-77_288-320
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02689.21 best | Herpes_Helicase | 46.3 | 2.40e-12 | 89.1% | 4.1% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vw4H00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.53 | 40.0 | 2.88e-01 | 87.0% | 63.5% |
| 5tnvA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 35.0 | 2.21e-01 | 73.9% | 70.6% |
| 3fetA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 36.0 | 2.55e-01 | 78.3% | 43.6% |
| 3f1yA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 38.0 | 2.41e-01 | 93.5% | 49.1% |
| 6vp6A03 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 35.0 | 2.25e-01 | 82.6% | 63.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3585925 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.63 | 43.0 | 2.90e-01 | 71.7% | 49.1% |
| 3392825 | 59.1.3.0 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains | 0.61 | 42.0 | 3.23e-01 | 71.7% | 63.0% |
| 3815492 | 2003.1.5.121 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 | 0.54 | 39.0 | 2.56e-01 | 78.3% | 52.4% |
| 3480627 | 59.1.3.0 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains | 0.52 | 37.0 | 3.17e-01 | 87.0% | 45.0% |
| 5032935 | 304.8.1.112 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MazE_antitoxin | 0.50 | 36.0 | 2.73e-01 | 80.4% | 74.1% |
D2
medium
residues 78-99_156-287_321-344
Domain cluster:
rep: helicase_subunit__YP_009179342__Elephant_endotheliotropic_herpesvirus_4__548914__D47-64_102-182_199-230
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02689.21 best | Herpes_Helicase | 130.2 | 1.10e-37 | 81.5% | 14.8% |
D3
medium
residues 405-501_778-804
Domain cluster:
rep: helicase-primase_helicase_subunit__NP_045354__Bovine_alphaherpesvirus_1__10320__D392-469_736-760
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02689.21 best | Herpes_Helicase | 103.2 | 1.50e-29 | 80.7% | 12.1% |
D4
medium
residues 525-589_658-692
Domain cluster:
rep: helicase-primase_helicase_subunit__YP_004940266__Saimiriine_betaherpesvirus_4__1535247__D509-572_638-677
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02689.21 best | Herpes_Helicase | 52.0 | 4.50e-14 | 69.0% | 7.3% |