helicase-primase_primase_subunit

Euk-Vir

Equid_gammaherpesvirus_2

helicase-primase_primase_subunit__NP_042653__Equid_gammaherpesvirus_2__12657

Identity

84.3 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Equid_gammaherpesvirus_2

TaxID: 12657

View cluster (58 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-135_150-186_222-240

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_010085930__Wood_mouse_herpesvirus__432370__D12-162

D2 high residues 760-878

PDB

Domain cluster: rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03121.21 best	Herpes_UL52	93.8	6.40e-27	63.0%	97.3%

D3 medium residues 187-221_241-287

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_401662__Human_gammaherpesvirus_4__10376__D153-223

D4 medium residues 360-524

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_182338__Gallid_alphaherpesvirus_1__10386__D431-468_522-592_634-660

D5 medium residues 525-562_586-605

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3gqcC04	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.64	57.0	4.49e-01	100.0%	91.7%
3aqoA01	3.30.70.3400	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.63	51.0	4.54e-01	98.3%	62.5%
2fmaA00	3.30.1490.140	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain	0.55	46.0	4.64e-01	100.0%	96.6%
3kdrA03	3.30.1120.70	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.55	42.0	4.51e-01	94.8%	96.0%
2dyuA01	3.60.110.10	Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase	0.55	47.0	3.05e-01	100.0%	81.6%
1f89A00	3.60.110.10	Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase	0.53	46.0	3.00e-01	98.3%	87.1%
3p8kA00	3.60.110.10	Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase	0.52	44.0	2.92e-01	100.0%	23.9%
1przA01	3.30.2350.10	Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase	0.52	44.0	3.09e-01	98.3%	31.8%
1k8bA00	3.30.30.50	Alpha Beta › 2-Layer Sandwich › Defensin A-like › Translation initiation factor 2 beta, aIF2beta, N-terminal domain	0.51	36.0	3.76e-01	100.0%	86.5%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4431446	230.1.1.5 ↗	a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1	0.59	42.0	3.05e-01	75.9%	62.4%
4346496	230.1.1.5 ↗	a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1	0.57	42.0	3.03e-01	79.3%	45.7%
3288955	302.1.1.1 ↗	a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C	0.57	50.0	4.07e-01	100.0%	83.5%
3858552	220.1.1.5 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PID	0.57	50.0	3.51e-01	100.0%	56.8%
None	—		0.54	45.0	2.81e-01	94.8%	38.1%
None	—		0.52	45.0	2.74e-01	94.8%	29.4%
4891117	4038.1.1.11 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal	0.51	41.0	2.37e-01	87.9%	85.2%
3620631	859.1.1.0 ↗	a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2	0.51	46.0	3.23e-01	100.0%	61.4%
4018204	325.1.1.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like	0.50	42.0	3.52e-01	100.0%	59.1%

D6 medium residues 563-585_606-716_728-754

PDB

Domain cluster: rep: primase__YP_009345453__Noumeavirus__1955558__D12-194