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helicase-primase_primase_subunit
Euk-VirGallid_alphaherpesvirus_3
helicase-primase_primase_subunit__NP_066885__Gallid_alphaherpesvirus_3__35250
Identity
- Accession:
- NP_066885 ↗
- Protein ID:
- helicase-primase_primase_subunit
- Kingdom:
- euk
Quality
75.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Gallid_alphaherpesvirus_3
TaxID: 35250
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 929-1070
Domain cluster:
rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03121.21 best | Herpes_UL52 | 80.6 | 8.50e-23 | 56.3% | 98.7% |
D2
medium
residues 1-56_73-164_181-236
D3
medium
residues 301-382
D4
medium
residues 418-443_574-606_687-706_778-799_836-915
Domain cluster:
rep: helicase-primase_primase_subunit__YP_009352963__Columbid_alphaherpesvirus_1__93386__D448-469_826-897_943-981
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 25.0 | 3.12e-01 | 74.6% | 61.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 26.0 | 3.05e-01 | 75.7% | 64.0% |
| 3967418 | 210.1.6.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept | 0.50 | 37.0 | 2.74e-01 | 76.8% | 91.4% |
D5
medium
residues 444-468_518-573