helicase-primase_primase_subunit

Euk-Vir

Meleagrid_alphaherpesvirus_1

helicase-primase_primase_subunit__NP_073347__Meleagrid_alphaherpesvirus_1__37108

Identity

73.9 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Meleagrid_alphaherpesvirus_1

TaxID: 37108

View cluster (58 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 321-409

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_009046553__Falconid_herpesvirus_1__1510155__D359-435

D2 high residues 939-1074

PDB

Domain cluster: rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03121.21 best	Herpes_UL52	87.8	4.80e-25	58.8%	98.7%

D3 medium residues 17-62_81-168_195-227

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_010085930__Wood_mouse_herpesvirus__432370__D12-162

D4 medium residues 228-320

PDB

Domain cluster: rep: helicase_primase_complex__NP_050224__Human_betaherpesvirus_6B__32604__D142-241

D5 medium residues 448-476_530-581

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_001033982__Gallid_alphaherpesvirus_2__10390__D447-473_538-595

D6 medium residues 582-646

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fouA01	1.10.246.30	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.56	38.0	3.68e-01	70.8%	74.3%
3gfaA00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.52	45.0	3.26e-01	100.0%	90.8%
1jogA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.51	41.0	3.25e-01	87.7%	65.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4324738	160.1.1.1 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C	0.68	49.0	3.67e-01	76.9%	37.0%
3492774	109.4.1.95 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2	0.54	42.0	3.21e-01	90.8%	48.0%
4339694	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.53	38.0	2.29e-01	75.4%	19.8%
3553147	133.1.1.1 ↗	alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF	0.53	42.0	3.08e-01	98.5%	85.3%
4030601	102.1.1.4 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc	0.51	38.0	3.26e-01	83.1%	71.3%

D7 medium residues 647-712_785-932

PDB

Domain cluster: rep: NTPase,_DNA_primase__YP_009408038__Eptesipox_virus__1329402__D10-229