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helicase-primase_primase_subunit

Euk-Vir

Elephantid_betaherpesvirus_1

helicase-primase_primase_subunit__YP_007969819__Elephantid_betaherpesvirus_1__146015

Identity

Accession:: YP_007969819 ↗
Protein ID:: helicase-primase_primase_subunit
Kingdom:: euk

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Proboscivirus› Elephantid_betaherpesvirus_1

TaxID: 146015

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 579-821

PDB

Domain cluster: rep: primase__YP_009345453__Noumeavirus__1955558__D12-194

D2 high residues 841-971

PDB

Domain cluster: rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03121.21 best	Herpes_UL52	62.6	3.50e-17	59.5%	93.3%

D3 medium residues 1-41_73-139_154-180

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_010085930__Wood_mouse_herpesvirus__432370__D12-162

D4 medium residues 181-249

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_401662__Human_gammaherpesvirus_4__10376__D153-223

D5 medium residues 250-315

PDB

Domain cluster: rep: E70__YP_007016467__Murid_betaherpesvirus_8__1261657__D218-274

D6 medium residues 476-495_523-578

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qzbA00	2.60.460.10	Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain	0.59	36.0	2.91e-01	72.4%	31.7%
4dg8A02	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.54	38.0	3.57e-01	72.4%	91.3%
2nq2D00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	37.0	2.66e-01	75.0%	92.3%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3730463	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.65	42.0	3.50e-01	73.7%	37.7%
3879591	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.58	41.0	2.70e-01	75.0%	47.4%
4490186	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.57	40.0	2.65e-01	75.0%	44.6%
3850966	3346.1.1.1 ↗	a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N	0.57	43.0	3.02e-01	81.6%	82.4%
4998245	316.1.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase	0.54	37.0	2.98e-01	72.4%	49.0%
3993658	221.1.1.170 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_ZFAND1	0.53	37.0	3.38e-01	73.7%	77.1%
4029049	2004.1.1.250 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd	0.53	37.0	2.40e-01	73.7%	45.4%
4518508	4271.1.1.3 ↗	alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N	0.52	38.0	2.81e-01	77.6%	78.1%