helicase-primase_primase_subunit

Euk-Vir

Bovine_gammaherpesvirus_6

helicase-primase_primase_subunit__YP_009042035__Bovine_gammaherpesvirus_6__1504288

Identity

89.4 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Bovine_gammaherpesvirus_6

TaxID: 1504288

View cluster (58 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-170

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_010085930__Wood_mouse_herpesvirus__432370__D12-162

D2 high residues 706-830

PDB

Domain cluster: rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03121.21 best	Herpes_UL52	96.7	8.30e-28	60.0%	97.3%

D3 medium residues 171-325

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_081518__Human_betaherpesvirus_5__10359__D142-335

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2icwG01	1.20.120.390	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1	0.60	39.0	4.22e-01	92.3%	79.0%
1qu7A00	1.10.287.950	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein	0.54	30.0	2.62e-01	90.3%	36.6%
1m5iA00	1.10.287.450	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.50	29.0	3.35e-01	88.4%	80.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3824276	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.59	28.0	2.71e-01	78.7%	37.2%
3598261	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.58	33.0	3.37e-01	92.9%	54.8%
4046724	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.56	31.0	3.21e-01	92.3%	54.7%
4026795	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.56	46.0	4.83e-01	86.5%	97.1%
3638435	1073.1.1.14 ↗	alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › LMBR1	0.55	31.0	3.60e-01	82.6%	74.6%
5040606	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.54	32.0	2.68e-01	83.2%	34.9%

D4 medium residues 326-449

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_182338__Gallid_alphaherpesvirus_1__10386__D431-468_522-592_634-660

D5 medium residues 487-705

PDB

Domain cluster: rep: primase__YP_009345453__Noumeavirus__1955558__D12-194