helicase-primase_primase_subunit

Euk-Vir

Equid_gammaherpesvirus_5

helicase-primase_primase_subunit__YP_009118446__Equid_gammaherpesvirus_5__10371

Identity

84.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Equid_gammaherpesvirus_5

TaxID: 10371

View cluster (58 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 789-913

PDB

Domain cluster: rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03121.21 best	Herpes_UL52	95.5	2.00e-27	60.0%	97.3%

D2 medium residues 27-139_159-182

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_010085930__Wood_mouse_herpesvirus__432370__D12-162

D3 medium residues 183-283

PDB

Domain cluster: rep: ORF56__YP_438180__Ovine_gammaherpesvirus_2__10398__D175-253

D4 medium residues 284-373_777-788

PDB

Domain cluster: rep: ORF56__YP_001129409__Human_gammaherpesvirus_8__37296__D254-341

D5 medium residues 411-463

PDB

Domain cluster: rep: ORF56__YP_001129409__Human_gammaherpesvirus_8__37296__D349-421

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gd5A00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.64	51.0	3.92e-01	90.6%	56.2%
4h8aB01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.57	40.0	3.90e-01	75.5%	85.0%
1jcfA03	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.56	43.0	3.91e-01	88.7%	89.5%
1zv1A00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.54	37.0	3.64e-01	73.6%	81.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4975202	102.1.1.11 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4	0.58	44.0	3.89e-01	90.6%	71.1%
4984012	102.1.1.30 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8	0.54	38.0	3.43e-01	77.4%	80.0%
4952406	210.1.3.4 ↗	a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6	0.54	39.0	2.70e-01	100.0%	21.0%

D6 medium residues 487-514_538-605_638-679_715-776

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_009551869__Rhinolophus_gammaherpesvirus_1__2054179__D453-572_659-709

D7 medium residues 515-537_680-714

PDB

Domain cluster: representative