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helicase-primase_primase_subunit

Euk-Vir

Testudinid_alphaherpesvirus_3

helicase-primase_primase_subunit__YP_009176890__Testudinid_alphaherpesvirus_3__2560801

Identity

Accession:
YP_009176890 ↗
Protein ID:
helicase-primase_primase_subunit
Kingdom:
euk

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Scutavirus› Testudinid_alphaherpesvirus_3

TaxID: 2560801

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 779-904
PDB
Domain cluster: rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03121.21 best Herpes_UL52 74.6 6.60e-21 59.5% 92.0%
D2 medium residues 1-164
PDB
D3 medium residues 378-489
PDB
Domain cluster: rep: helicase-primase_primase_subunit__YP_001033982__Gallid_alphaherpesvirus_2__10390__D447-473_538-595
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 30.0 3.48e-01 85.7% 63.4%
7dluA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 32.0 3.71e-01 85.7% 72.2%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 28.0 3.32e-01 91.1% 64.9%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 33.0 3.74e-01 85.7% 72.4%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 31.0 3.32e-01 88.4% 58.8%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 29.0 2.95e-01 83.0% 50.5%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 31.0 3.27e-01 89.3% 61.0%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 27.0 3.02e-01 91.1% 55.7%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 30.0 3.04e-01 85.7% 53.2%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 29.0 3.13e-01 89.3% 59.3%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 42.0 4.09e-01 83.0% 93.5%
4bfeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 25.0 2.86e-01 86.6% 56.8%
1vr4E00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.52 33.0 3.64e-01 85.7% 77.4%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 34.0 3.45e-01 91.1% 67.6%
4m9pA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 26.0 2.76e-01 86.6% 52.0%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.50 26.0 2.88e-01 88.4% 58.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3950407 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 32.0 3.52e-01 87.5% 55.6%
4300927 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 32.0 3.22e-01 85.7% 46.1%
4376910 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.63 37.0 3.99e-01 85.7% 68.4%
4200948 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.59 29.0 3.08e-01 88.4% 50.0%
3723823 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 37.0 4.15e-01 82.1% 83.3%
3892016 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.57 38.0 3.53e-01 83.0% 53.1%
3735293 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.56 34.0 2.62e-01 85.7% 25.8%
4331534 1197.1.1.1 ↗ alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.54 38.0 3.21e-01 72.3% 79.0%
3388757 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 27.0 2.85e-01 89.3% 51.4%
5020004 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.51 33.0 3.96e-01 87.5% 98.7%
3862496 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 27.0 2.60e-01 90.2% 41.6%
5021362 301.8.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase 0.51 41.0 4.17e-01 95.5% 89.1%
3932886 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 36.0 3.84e-01 80.4% 85.3%
4193755 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.50 29.0 3.37e-01 78.6% 81.3%
D4 medium residues 527-606_619-755
PDB
Domain cluster: rep: NTPase,_DNA_primase__YP_009408038__Eptesipox_virus__1329402__D10-229