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helicase-primase_primase_subunit
Euk-VirSuid_alphaherpesvirus_1
helicase-primase_primase_subunit__YP_068322__Suid_alphaherpesvirus_1__10345
Identity
- Accession:
- YP_068322 ↗
- Protein ID:
- helicase-primase_primase_subunit
- Kingdom:
- euk
Quality
79.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Suid_alphaherpesvirus_1
TaxID: 10345
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-215_234-260
D2
high
residues 823-944
Domain cluster:
rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03121.21 best | Herpes_UL52 | 77.3 | 9.30e-22 | 57.4% | 96.0% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h91A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.66 | 45.0 | 3.95e-01 | 97.5% | 47.2% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 44.0 | 4.24e-01 | 78.7% | 82.4% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 42.0 | 4.71e-01 | 84.4% | 100.0% |
| 7dd9A02 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.57 | 45.0 | 3.59e-01 | 86.1% | 93.4% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 48.0 | 4.40e-01 | 92.6% | 96.3% |
| 4bboA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.56 | 45.0 | 4.72e-01 | 96.7% | 93.8% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 49.0 | 4.24e-01 | 95.1% | 94.7% |
| 3eyrA00 | 3.15.10.40 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 | 0.56 | 48.0 | 4.32e-01 | 95.1% | 74.0% |
| 4r1kB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 46.0 | 4.48e-01 | 91.0% | 97.8% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 4.27e-01 | 83.6% | 100.0% |
| 3soyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 4.17e-01 | 85.2% | 100.0% |
| 4bj8K00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.55 | 47.0 | 4.78e-01 | 99.2% | 96.7% |
| 3d9rB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 41.0 | 4.04e-01 | 80.3% | 96.2% |
| 4fuvA00 | 2.40.160.170 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 43.0 | 3.67e-01 | 87.7% | 97.2% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 4.12e-01 | 78.7% | 100.0% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 38.0 | 3.86e-01 | 73.8% | 98.4% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 4.26e-01 | 78.7% | 95.0% |
| 6dnzA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.53 | 42.0 | 3.73e-01 | 84.4% | 100.0% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.53 | 47.0 | 4.40e-01 | 98.4% | 88.2% |
| 3kg6C00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.53 | 41.0 | 3.15e-01 | 81.1% | 85.2% |
| 5is8A02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.53 | 42.0 | 3.66e-01 | 87.7% | 91.5% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 4.01e-01 | 85.2% | 88.7% |
| 4fczA00 | 3.10.450.710 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC | 0.52 | 44.0 | 3.85e-01 | 92.6% | 82.0% |
| 5dstA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.52 | 41.0 | 3.70e-01 | 86.9% | 100.0% |
| 3f1tB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 41.0 | 4.05e-01 | 88.5% | 98.5% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.51 | 42.0 | 3.38e-01 | 91.0% | 63.4% |
| 5dl7A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.51 | 42.0 | 3.00e-01 | 92.6% | 60.9% |
| 3bgaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 44.0 | 3.47e-01 | 98.4% | 97.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3408795 | 12.1.1.60 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Chitin_bind_4 | 0.63 | 29.0 | 3.90e-01 | 91.8% | 83.6% |
| 3486056 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 42.0 | 3.94e-01 | 93.4% | 55.0% |
| 3414586 | 11.1.1.824 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Chitin_bind_4 | 0.63 | 30.0 | 3.35e-01 | 93.4% | 57.0% |
| 4348187 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 41.0 | 4.69e-01 | 87.7% | 94.1% |
| 3466699 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 42.0 | 4.63e-01 | 77.0% | 88.8% |
| 3270456 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.60 | 46.0 | 3.97e-01 | 95.1% | 50.8% |
| 3228525 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.60 | 42.0 | 4.47e-01 | 96.7% | 80.9% |
| None | — | 0.60 | 42.0 | 3.48e-01 | 94.3% | 39.5% | |
| 3934854 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 47.0 | 4.44e-01 | 87.7% | 78.7% |
| 3733248 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 43.0 | 3.99e-01 | 80.3% | 82.5% |
| 3179489 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.57 | 41.0 | 3.99e-01 | 100.0% | 66.4% |
| 3247589 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 43.0 | 4.22e-01 | 80.3% | 95.5% |
| 3697793 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.56 | 47.0 | 3.15e-01 | 91.8% | 61.4% |
| 3544803 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.56 | 43.0 | 3.74e-01 | 94.3% | 51.8% |
| 3412007 | 292.2.1.13 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Chitin_bind_4 | 0.55 | 31.0 | 3.95e-01 | 97.5% | 97.1% |
| 4957055 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.54 | 33.0 | 4.00e-01 | 77.9% | 97.3% |
| 3799143 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.54 | 42.0 | 4.07e-01 | 97.5% | 73.3% |
| 3400513 | 77.1.1.4 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Chitin_bind_4 | 0.53 | 34.0 | 4.05e-01 | 90.2% | 100.0% |
| 4888729 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.53 | 36.0 | 3.81e-01 | 82.0% | 78.3% |
| 5002369 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 42.0 | 4.33e-01 | 84.4% | 99.1% |
| 3429047 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.52 | 43.0 | 3.28e-01 | 90.2% | 42.7% |
| 3783541 | 708.1.1.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › Gti1_Pac2 | 0.52 | 36.0 | 3.32e-01 | 72.1% | 70.3% |
| 3217508 | 243.1.1.97 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_N | 0.52 | 40.0 | 4.05e-01 | 83.6% | 100.0% |
| 4451874 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.51 | 43.0 | 3.73e-01 | 90.2% | 78.9% |
| 4464528 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 39.0 | 4.13e-01 | 82.0% | 100.0% |
| 4976692 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.51 | 41.0 | 3.28e-01 | 86.9% | 42.9% |
| 3169052 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.51 | 44.0 | 3.03e-01 | 99.2% | 44.0% |
| 4015605 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.51 | 44.0 | 3.90e-01 | 94.3% | 68.0% |
D3
medium
residues 216-233_265-335
D4
medium
residues 371-392_494-588_680-818
Domain cluster:
rep: NTPase,_DNA_primase__YP_009408038__Eptesipox_virus__1329402__D10-229
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.66 | 32.0 | 4.58e-01 | 83.6% | 99.2% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 33.0 | 4.53e-01 | 88.3% | 95.3% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.64 | 35.0 | 4.51e-01 | 87.1% | 92.3% |
| 4j37A01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.62 | 28.0 | 4.14e-01 | 87.5% | 96.3% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 25.0 | 3.95e-01 | 86.7% | 98.9% |
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 23.0 | 3.74e-01 | 86.3% | 90.2% |
| 1ivzA00 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.62 | 32.0 | 4.33e-01 | 80.5% | 94.7% |
| 5xoyB02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 28.0 | 4.20e-01 | 82.4% | 100.0% |
| 1f3vA00 | 3.30.70.680 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain | 0.61 | 34.0 | 4.24e-01 | 85.2% | 87.3% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 28.0 | 4.06e-01 | 78.5% | 98.2% |
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 25.0 | 3.65e-01 | 71.1% | 86.6% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 27.0 | 3.99e-01 | 86.3% | 100.0% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 28.0 | 4.05e-01 | 85.2% | 100.0% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.55 | 17.0 | 3.17e-01 | 85.9% | 100.0% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.54 | 37.0 | 4.25e-01 | 77.0% | 91.2% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.54 | 34.0 | 4.12e-01 | 84.8% | 96.9% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 25.0 | 3.50e-01 | 71.5% | 94.6% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.52 | 40.0 | 4.03e-01 | 79.7% | 98.5% |
| 3f8uB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 26.0 | 3.56e-01 | 72.3% | 94.4% |
| 6wl5A01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 29.0 | 3.74e-01 | 74.2% | 96.0% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3512046 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.71 | 60.0 | 6.06e-01 | 87.1% | 91.8% |
| 3608399 | 862.1.1.7 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PPL5 | 0.71 | 58.0 | 6.09e-01 | 87.5% | 91.5% |
| 3717917 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.71 | 60.0 | 5.25e-01 | 87.9% | 93.1% |
| 4673704 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.70 | 60.0 | 5.79e-01 | 87.5% | 80.7% |
| 3596656 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.70 | 59.0 | 5.75e-01 | 86.7% | 91.6% |
| 3715696 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.70 | 59.0 | 5.64e-01 | 87.1% | 89.2% |
| 4001493 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.69 | 57.0 | 5.92e-01 | 85.9% | 92.1% |
| 4933653 | 304.31.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red | 0.69 | 33.0 | 4.77e-01 | 80.9% | 100.0% |
| 4943953 | 304.31.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red | 0.69 | 33.0 | 4.76e-01 | 80.5% | 100.0% |
| 3626314 | 862.1.1.11 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R | 0.68 | 57.0 | 5.84e-01 | 86.7% | 89.2% |
| 3621161 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.68 | 34.0 | 4.82e-01 | 84.8% | 100.0% |
| 3993060 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.68 | 34.0 | 4.77e-01 | 85.2% | 100.0% |
| 3582249 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.66 | 31.0 | 4.57e-01 | 89.5% | 99.1% |
| 3619535 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.65 | 30.0 | 4.43e-01 | 82.0% | 97.3% |
| 3717098 | 862.1.1.7 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PPL5 | 0.65 | 56.0 | 5.32e-01 | 88.3% | 93.8% |
| 1124197 | 304.141.1.1 ↗ | a+b two layers › Alpha-beta plaits › Avirulence Effector AvrLm4-7 › Avirulence Effector AvrLm4-7 › AvrLm4-7 | 0.65 | 33.0 | 4.54e-01 | 89.1% | 95.4% |
| 4236888 | 304.10.1.0 ↗ | a+b two layers › Alpha-beta plaits › RuBisCO, large subunit, small (N-terminal) domain › RuBisCO, large subunit, small (N-terminal) domain | 0.65 | 29.0 | 4.35e-01 | 83.6% | 97.3% |
| 3883294 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.65 | 34.0 | 4.66e-01 | 71.1% | 98.5% |
| 3753506 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.64 | 33.0 | 4.50e-01 | 84.4% | 96.9% |
| 3611742 | 304.42.1.1 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC | 0.61 | 35.0 | 4.39e-01 | 89.5% | 92.8% |
| 3934872 | 3122.1.1.2 ↗ | a+b complex topology › MESD › MESD › MESD › SCVP | 0.60 | 27.0 | 4.06e-01 | 75.4% | 100.0% |
| 1219773 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.59 | 22.0 | 3.44e-01 | 85.9% | 85.6% |
| 4053989 | 304.9.1.71 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD | 0.58 | 31.0 | 4.03e-01 | 85.5% | 90.7% |
| 3770950 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.58 | 32.0 | 4.28e-01 | 82.8% | 100.0% |
| 3609026 | 304.20.1.0 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0.58 | 34.0 | 4.32e-01 | 77.7% | 99.3% |
| 3635748 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.57 | 29.0 | 4.05e-01 | 84.4% | 100.0% |
| 3559614 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.56 | 33.0 | 4.21e-01 | 84.8% | 100.0% |
| 4030594 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.56 | 34.0 | 4.19e-01 | 78.9% | 95.0% |
| 3588046 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.53 | 40.0 | 4.04e-01 | 77.3% | 100.0% |
| 4007464 | 304.55.1.19 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Inovirus_Gp2 | 0.53 | 38.0 | 4.33e-01 | 72.7% | 100.0% |
| 4170426 | 304.8.1.70 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA | 0.52 | 41.0 | 4.00e-01 | 81.2% | 92.3% |
| 3986356 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.52 | 40.0 | 3.90e-01 | 78.1% | 91.8% |
| 4511949 | 304.48.1.74 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Phage_GPA | 0.52 | 41.0 | 4.24e-01 | 81.2% | 90.8% |
| 4315665 | 304.8.1.91 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 | 0.52 | 39.0 | 4.29e-01 | 79.7% | 94.8% |
| 3679255 | 304.55.1.15 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N | 0.52 | 27.0 | 3.71e-01 | 75.4% | 98.5% |
| 4962041 | 304.55.1.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains | 0.51 | 36.0 | 3.98e-01 | 71.1% | 97.5% |
| 3968511 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.50 | 34.0 | 3.97e-01 | 83.6% | 97.7% |
| None | — | 0.50 | 37.0 | 3.79e-01 | 74.2% | 95.9% |
D5
medium
residues 393-414_447-493