helicase-primase_subunit

Euk-Vir

Human_alphaherpesvirus_3

helicase-primase_subunit__NP_040174__Human_alphaherpesvirus_3__10335

Identity

89.2 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Human_alphaherpesvirus_3

TaxID: 10335

View cluster (61 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-153

PDB

Domain cluster: rep: helicase-primase_subunit__YP_068368__Suid_alphaherpesvirus_1__10345__D1-121

D2 medium residues 154-263

PDB

Domain cluster: rep: helicase-primase_subunit__YP_001033936__Gallid_alphaherpesvirus_2__10390__D159-238

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bs6A01	2.40.128.190	Mainly Beta › Beta Barrel › Lipocalin ›	0.63	27.0	3.11e-01	70.0%	50.0%
3zsjA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.61	29.0	2.74e-01	70.0%	35.5%
3ke6B01	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.56	38.0	3.05e-01	70.9%	51.6%
2pk0A00	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.53	36.0	2.80e-01	70.9%	61.9%
4q28A00	3.30.160.780	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.52	36.0	3.63e-01	72.7%	70.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5014685	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.71	29.0	3.73e-01	70.0%	63.1%
4031403	243.3.1.72 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF29898	0.67	27.0	3.99e-01	70.9%	84.0%
4108772	243.3.1.10 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2	0.65	29.0	3.47e-01	71.8%	61.3%
4945445	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.55	31.0	3.31e-01	71.8%	62.8%
1298174	260.1.1.1 ↗	a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin	0.52	36.0	3.63e-01	72.7%	70.9%

D3 medium residues 264-357

PDB

Domain cluster: rep: ORF40__YP_009173917__Felis_catus_gammaherpesvirus_1__1452540__D204-289

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03324.21 best	Herpes_HEPA	68.7	6.50e-19	70.2%	68.1%

D4 medium residues 358-469

PDB

Domain cluster: representative

D5 medium residues 470-582

PDB

Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289

D6 medium residues 583-771

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009342398__Spheniscid_alphaherpesvirus_1__2560777__D627-772