helicase-primase_subunit

Euk-Vir

Equid_alphaherpesvirus_4

helicase-primase_subunit__NP_045271__Equid_alphaherpesvirus_4__10331

Identity

90.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_4

TaxID: 10331

View cluster (61 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 374-422_477-586

PDB

Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289

D2 high residues 593-749

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009342398__Spheniscid_alphaherpesvirus_1__2560777__D627-772

D3 medium residues 1-144

PDB

Domain cluster: rep: helicase-primase_subunit__YP_068368__Suid_alphaherpesvirus_1__10345__D1-121

D4 medium residues 233-297

PDB

Domain cluster: rep: helicase-primase_subunit__YP_002333535__Equid_alphaherpesvirus_9__55744__D230-261_274-295

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03324.21 best	Herpes_HEPA	52.5	7.50e-14	100.0%	61.5%

D5 medium residues 298-354

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fvaC00	3.60.10.10	Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase	0.54	44.0	2.94e-01	93.0%	28.3%
7mdhA02	3.90.110.10	Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	0.52	38.0	2.72e-01	77.2%	41.6%
2ft0A00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.52	38.0	2.62e-01	78.9%	80.6%
8hp8A01	1.10.530.40	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.52	39.0	2.96e-01	84.2%	47.7%
1v61A00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.51	36.0	2.83e-01	75.4%	84.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3441614	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.56	43.0	3.02e-01	84.2%	36.2%
3632914	226.1.1.0 ↗	a+b two layers › POZ domain › POZ domain › POZ domain	0.52	35.0	2.77e-01	71.9%	74.2%
4963199	219.1.1.13 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core	0.50	35.0	2.65e-01	77.2%	44.2%

D6 medium residues 423-476

PDB

Domain cluster: rep: UL8__YP_003084415__Anatid_alphaherpesvirus_1__104388__D442-496