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helicase-primase_subunit

Euk-Vir

Gallid_alphaherpesvirus_3

helicase-primase_subunit__NP_066838__Gallid_alphaherpesvirus_3__35250

Identity

Accession:: NP_066838 ↗
Protein ID:: helicase-primase_subunit
Kingdom:: euk

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_3

TaxID: 35250

Cluster

View cluster (61 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-157_220-263_280-306

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009010994__Chimpanzee_herpesvirus_strain_105640__332937__D1-146_230-250_272-307

D2 medium residues 158-219_264-279_307-385

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009046502__Falconid_herpesvirus_1__1510155__D156-245_261-383

D3 medium residues 413-426_510-526_570-598

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4a2lF02	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.67	39.0	2.43e-01	95.0%	10.7%
5i4eA01	2.30.30.360	Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal	0.56	37.0	4.10e-01	88.3%	91.3%
3lxqA01	3.30.1120.80	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.55	41.0	3.44e-01	100.0%	47.5%
4b9wA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.55	36.0	3.76e-01	86.7%	73.2%
2dk7A00	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.54	32.0	3.07e-01	91.7%	46.6%
4kfuA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	41.0	2.88e-01	85.0%	96.1%
2yyzA02	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.52	41.0	4.17e-01	90.0%	100.0%
3goxA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.52	36.0	3.77e-01	90.0%	86.3%
3icsA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.52	43.0	3.14e-01	100.0%	82.1%
4m4zA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.52	35.0	3.76e-01	81.7%	89.4%
1z1bA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.51	28.0	2.92e-01	96.7%	54.4%
3mswA00	2.40.128.720	Mainly Beta › Beta Barrel › Lipocalin ›	0.50	40.0	3.06e-01	95.0%	37.4%
1qzyA01	3.90.230.10	Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily	0.50	42.0	2.83e-01	100.0%	63.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.66	37.0	2.43e-01	93.3%	12.5%
185632	5.1.4.26 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop	0.63	39.0	2.45e-01	96.7%	11.8%
3378005	5.1.3.118 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3	0.63	41.0	2.60e-01	95.0%	13.8%

D4 medium residues 427-509_527-569

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009352912__Columbid_alphaherpesvirus_1__93386__D444-518_574-590

D5 medium residues 599-764

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009342398__Spheniscid_alphaherpesvirus_1__2560777__D627-772