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helicase-primase_subunit

Euk-Vir

Gallid_alphaherpesvirus_2

helicase-primase_subunit__YP_001033936__Gallid_alphaherpesvirus_2__10390

Identity

Accession:
YP_001033936 ↗
Protein ID:
helicase-primase_subunit
Kingdom:
euk

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_2

TaxID: 10390

Cluster

View cluster (61 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 602-764
PDB
Domain cluster: rep: helicase-primase_subunit__YP_009342398__Spheniscid_alphaherpesvirus_1__2560777__D627-772
D2 medium residues 15-158
PDB
Domain cluster: rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D1-152
D3 medium residues 159-238
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.58 52.0 3.75e-01 98.8% 52.5%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 33.0 2.99e-01 86.3% 39.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 32.0 3.41e-01 95.0% 62.0%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 36.0 2.80e-01 96.2% 28.5%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 49.0 4.40e-01 100.0% 70.9%
3abiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 44.0 3.37e-01 85.0% 86.4%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 48.0 3.43e-01 100.0% 92.2%
2d44A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 2.64e-01 75.0% 62.8%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 48.0 3.33e-01 100.0% 84.0%
2gq1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.53 43.0 3.44e-01 97.5% 42.4%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 48.0 3.14e-01 100.0% 59.6%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 45.0 3.48e-01 97.5% 57.8%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 38.0 2.98e-01 95.0% 34.5%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.52 38.0 3.54e-01 98.8% 60.8%
7r5yA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 45.0 2.87e-01 97.5% 89.0%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 45.0 3.41e-01 98.8% 94.6%
2dc1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 41.0 3.82e-01 87.5% 85.1%
4ghnA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 37.0 3.43e-01 81.2% 61.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014686 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.64 34.0 3.95e-01 95.0% 72.7%
5014688 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 33.0 3.82e-01 93.8% 70.9%
3320813 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.61 36.0 3.74e-01 96.2% 63.0%
5038444 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 36.0 3.81e-01 97.5% 68.6%
4982262 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.59 35.0 3.62e-01 98.8% 62.7%
3837684 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.58 49.0 3.52e-01 95.0% 31.7%
3520847 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.58 35.0 3.55e-01 96.2% 60.0%
3401140 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.58 39.0 2.41e-01 96.2% 12.2%
4986017 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 30.0 3.16e-01 92.5% 54.3%
1298174 260.1.1.1 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.56 49.0 4.40e-01 100.0% 70.9%
5054046 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.55 29.0 3.24e-01 92.5% 63.3%
5045333 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 31.0 3.27e-01 95.0% 59.4%
3479441 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 44.0 2.96e-01 100.0% 22.2%
5070387 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 33.0 3.44e-01 98.8% 65.3%
3275868 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 33.0 3.38e-01 98.8% 61.3%
3432858 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.54 38.0 3.16e-01 97.5% 40.7%
4945445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 38.0 3.62e-01 96.2% 62.8%
4988831 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 31.0 3.60e-01 91.3% 81.8%
3972798 210.1.5.1 ↗ a+b four layers › Ntn/PP2C › Ntn › SPO2555-like › DUF1028 0.53 45.0 3.39e-01 97.5% 91.4%
5012842 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 36.0 3.53e-01 98.8% 64.7%
3416342 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.53 47.0 2.97e-01 100.0% 59.6%
5045923 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 39.0 3.77e-01 98.8% 67.4%
3981224 5084.5.1.22 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF3971 0.53 45.0 3.03e-01 96.2% 29.1%
3553659 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.53 47.0 3.00e-01 100.0% 61.6%
5078375 210.1.5.1 ↗ a+b four layers › Ntn/PP2C › Ntn › SPO2555-like › DUF1028 0.52 42.0 3.24e-01 91.3% 93.7%
4945607 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 35.0 3.48e-01 98.8% 67.1%
3929065 872.1.1.0 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.51 29.0 3.38e-01 86.3% 81.8%
1174360 7.1.1.11 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › Pept_S41_N_bact 0.50 37.0 3.47e-01 81.2% 63.4%
3438374 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 35.0 2.37e-01 75.0% 35.0%
D4 medium residues 306-366
PDB
Domain cluster: rep: helicase-primase_subunit__NP_045271__Equid_alphaherpesvirus_4__10331__D298-354
D5 medium residues 410-435_509-601
PDB
Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289
D6 medium residues 436-508
PDB
Domain cluster: rep: UL8__YP_003084415__Anatid_alphaherpesvirus_1__104388__D442-496