←Back to structures

helicase-primase_subunit

Euk-Vir

Aotine_betaherpesvirus_1

helicase-primase_subunit__YP_004940117__Aotine_betaherpesvirus_1__50290

Identity

Accession:
YP_004940117 ↗
Protein ID:
helicase-primase_subunit
Kingdom:
euk

Quality

85.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Aotine_betaherpesvirus_1

TaxID: 50290

Cluster

View cluster (61 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-145
PDB
Domain cluster: rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D1-152
D2 medium residues 146-158_181-351
PDB
Domain cluster: rep: ORF31__NP_733884__Callitrichine_gammaherpesvirus_3__106331__D132-145_190-351
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03324.21 best Herpes_HEPA 84.5 7.40e-24 46.7% 97.8%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 35.0 4.21e-01 94.6% 96.6%
2gv9A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 43.0 4.08e-01 88.0% 99.1%
2c1iA01 3.30.565.50 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.50 21.0 2.68e-01 71.2% 62.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5025208 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.54 50.0 4.62e-01 100.0% 90.9%
4997716 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.54 48.0 4.46e-01 95.1% 97.8%
3802227 2484.1.1.197 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 0.54 49.0 3.17e-01 100.0% 27.8%
4534384 1.1.3.4 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › SymE_toxin 0.53 17.0 3.04e-01 75.0% 94.4%
5081878 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 48.0 3.85e-01 100.0% 56.9%
5031060 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.52 27.0 3.29e-01 93.5% 76.5%
5011572 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.51 26.0 3.27e-01 93.5% 79.1%
5024339 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.51 26.0 3.25e-01 93.5% 76.5%
4091986 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 30.0 3.77e-01 83.7% 94.8%
D3 medium residues 352-562
PDB
Domain cluster: rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D346-536
D4 medium residues 563-683_709-734
PDB
Domain cluster: rep: E102__YP_007016498__Murid_betaherpesvirus_8__1261657__D578-728