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helicase-primase_subunit
Euk-VirElephant_endotheliotropic_herpesvirus_5
helicase-primase_subunit__YP_009051977__Elephant_endotheliotropic_herpesvirus_5__768738
Identity
- Accession:
- YP_009051977 ↗
- Protein ID:
- helicase-primase_subunit
- Kingdom:
- euk
Quality
66.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Proboscivirus›
Elephant_endotheliotropic_herpesvirus_5
TaxID: 768738
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 371-524
D2
high
residues 533-677
D3
medium
residues 7-135_207-223_303-317
D4
medium
residues 136-206_224-302
Domain cluster:
rep: helicase-primase_subunit__YP_073814__Human_betaherpesvirus_7__10372__D138-187_240-323
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03324.21 best | Herpes_HEPA | 53.1 | 4.80e-14 | 59.3% | 80.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4adiA02 | 3.30.67.20 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Rubella membrane glycoprotein E1, domain 2 | 0.62 | 25.0 | 3.20e-01 | 99.3% | 61.4% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.57 | 27.0 | 3.58e-01 | 94.0% | 81.2% |
| 6fmeA03 | 2.20.220.10 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases | 0.51 | 24.0 | 3.29e-01 | 72.0% | 100.0% |
| 3nd5A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 27.0 | 2.78e-01 | 100.0% | 50.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4508883 | 2484.6.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD | 0.56 | 29.0 | 3.56e-01 | 93.3% | 76.8% |
| 5070158 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.55 | 46.0 | 3.55e-01 | 100.0% | 39.4% |
| 4978331 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.51 | 21.0 | 3.10e-01 | 72.7% | 84.3% |
| 3310760 | 2484.1.1.7 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 | 0.50 | 37.0 | 4.00e-01 | 96.7% | 88.5% |
| 2458379 | 12.1.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Suc_Porlyase_C | 0.50 | 23.0 | 3.11e-01 | 70.0% | 85.9% |