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helicase-primase_subunit
Euk-VirMacropodid_alphaherpesvirus_1
helicase-primase_subunit__YP_009227241__Macropodid_alphaherpesvirus_1__137443
Identity
- Accession:
- YP_009227241 ↗
- Protein ID:
- helicase-primase_subunit
- Kingdom:
- euk
Quality
87.7
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Simplexvirus›
Macropodid_alphaherpesvirus_1
TaxID: 137443
Cluster
View cluster (61 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 585-747
Domain cluster:
rep: helicase-primase_subunit__YP_009342398__Spheniscid_alphaherpesvirus_1__2560777__D627-772
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qclA05 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.68 | 63.0 | 6.24e-01 | 99.4% | 98.8% |
| 4fxdA06 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.67 | 62.0 | 6.25e-01 | 98.8% | 100.0% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.60 | 35.0 | 4.38e-01 | 87.7% | 95.9% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 40.0 | 3.87e-01 | 96.9% | 60.9% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 25.0 | 3.72e-01 | 87.7% | 100.0% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 34.0 | 4.27e-01 | 88.3% | 96.9% |
| 5f42A02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.57 | 26.0 | 3.50e-01 | 89.6% | 81.7% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 32.0 | 3.97e-01 | 87.1% | 94.7% |
| 4exjA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 33.0 | 3.79e-01 | 96.9% | 80.2% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 38.0 | 3.53e-01 | 100.0% | 56.4% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.53 | 32.0 | 3.97e-01 | 96.3% | 98.0% |
| 4kn7D01 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.52 | 35.0 | 3.92e-01 | 92.0% | 84.2% |
| 3ppbA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 36.0 | 3.43e-01 | 98.2% | 60.6% |
| 3zheA02 | 1.25.40.760 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 31.0 | 2.88e-01 | 95.7% | 44.9% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.51 | 25.0 | 3.15e-01 | 70.6% | 77.3% |
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.51 | 36.0 | 3.93e-01 | 93.3% | 86.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4223248 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.77 | 45.0 | 5.39e-01 | 92.6% | 85.5% |
| 4346136 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.73 | 29.0 | 4.46e-01 | 73.0% | 90.8% |
| 4931503 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.66 | 32.0 | 4.54e-01 | 87.7% | 100.0% |
| 5007869 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.60 | 31.0 | 3.82e-01 | 92.0% | 78.0% |
| 3694137 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.59 | 36.0 | 3.27e-01 | 96.9% | 43.6% |
| 3626530 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 32.0 | 3.97e-01 | 87.1% | 88.4% |
| 3786307 | 109.4.1.228 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C | 0.57 | 45.0 | 3.68e-01 | 97.5% | 44.7% |
| 3281218 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.56 | 39.0 | 4.29e-01 | 92.0% | 86.7% |
| 3390092 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 37.0 | 4.13e-01 | 92.0% | 86.9% |
| 3701966 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 45.0 | 3.32e-01 | 97.5% | 35.1% |
| 3992995 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 29.0 | 3.42e-01 | 90.8% | 78.6% |
| 4278611 | 604.12.1.15 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Mito_morph_reg | 0.51 | 32.0 | 3.53e-01 | 84.7% | 76.9% |
| 4091932 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 38.0 | 4.09e-01 | 89.0% | 93.3% |
| 3711528 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 36.0 | 3.28e-01 | 73.0% | 89.1% |
| 3712221 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.51 | 34.0 | 3.62e-01 | 90.2% | 75.9% |
D2
medium
residues 1-145
Domain cluster:
rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D1-152
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.75 | 32.0 | 4.06e-01 | 87.6% | 66.7% |
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 31.0 | 3.53e-01 | 86.2% | 55.0% |
| 3en2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 41.0 | 5.13e-01 | 95.2% | 100.0% |
| 1vqqA01 | 3.10.450.100 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 | 0.63 | 31.0 | 3.48e-01 | 86.9% | 58.7% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 29.0 | 2.77e-01 | 73.1% | 36.4% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 42.0 | 4.79e-01 | 96.6% | 92.7% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 40.0 | 4.82e-01 | 96.6% | 99.0% |
| 3ub1D02 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 29.0 | 3.26e-01 | 86.9% | 55.3% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 41.0 | 4.77e-01 | 96.6% | 97.1% |
| 3kojB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 35.0 | 4.28e-01 | 92.4% | 91.1% |
| 1wnhA02 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 29.0 | 3.17e-01 | 87.6% | 54.2% |
| 5dvyA01 | 3.10.450.100 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 | 0.59 | 32.0 | 3.37e-01 | 91.7% | 57.1% |
| 3eyrA00 | 3.15.10.40 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 | 0.55 | 35.0 | 3.34e-01 | 90.3% | 53.8% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.53 | 21.0 | 3.03e-01 | 76.6% | 78.1% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 32.0 | 3.59e-01 | 95.9% | 77.1% |
| 5i97C00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.53 | 30.0 | 3.07e-01 | 83.4% | 56.2% |
| 3mg1B02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 30.0 | 3.24e-01 | 88.3% | 64.8% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 35.0 | 3.40e-01 | 76.6% | 60.7% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 35.0 | 3.30e-01 | 76.6% | 59.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3672943 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 33.0 | 4.75e-01 | 86.9% | 100.0% |
| 1278471 | 243.1.1.7 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N | 0.64 | 32.0 | 3.54e-01 | 88.3% | 58.8% |
| 222748 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.63 | 39.0 | 4.84e-01 | 92.4% | 100.0% |
| 5046475 | 2.2.1.0 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins | 0.62 | 43.0 | 4.63e-01 | 97.9% | 85.8% |
| 3451025 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.61 | 33.0 | 3.89e-01 | 89.7% | 74.0% |
| 5034706 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.61 | 30.0 | 4.01e-01 | 84.1% | 89.3% |
| 3965166 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 38.0 | 4.75e-01 | 91.7% | 100.0% |
| 3783432 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.61 | 43.0 | 4.97e-01 | 95.9% | 99.0% |
| 5045679 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 31.0 | 3.35e-01 | 92.4% | 55.2% |
| 4136826 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.59 | 29.0 | 3.02e-01 | 88.3% | 46.4% |
| 3588474 | 243.1.1.17 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC | 0.59 | 31.0 | 3.36e-01 | 88.3% | 59.2% |
| 5040972 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 30.0 | 3.88e-01 | 83.4% | 90.7% |
| 3473720 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.58 | 42.0 | 4.77e-01 | 97.2% | 97.3% |
| 3616890 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.58 | 42.0 | 4.73e-01 | 98.6% | 94.8% |
| 3739446 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 30.0 | 3.55e-01 | 91.7% | 74.7% |
| 3734807 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 31.0 | 3.01e-01 | 90.3% | 45.3% |
| 3957514 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 28.0 | 3.01e-01 | 91.0% | 52.3% |
| 4807965 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.55 | 32.0 | 3.81e-01 | 97.9% | 84.7% |
| 3289158 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 32.0 | 3.65e-01 | 89.7% | 77.3% |
| 4259027 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.53 | 35.0 | 3.83e-01 | 76.6% | 79.7% |
| 3694950 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 29.0 | 2.98e-01 | 91.0% | 51.0% |
| 4097328 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.53 | 36.0 | 3.84e-01 | 76.6% | 79.2% |
| 3518540 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 41.0 | 2.89e-01 | 82.8% | 76.3% |
| 3591628 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 34.0 | 3.76e-01 | 90.3% | 81.7% |
| 860 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.52 | 35.0 | 3.79e-01 | 76.6% | 81.1% |
| 4371290 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.51 | 35.0 | 3.72e-01 | 76.6% | 79.8% |
| 3307679 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.51 | 30.0 | 3.14e-01 | 89.7% | 60.0% |
| 3725005 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.51 | 30.0 | 3.14e-01 | 88.3% | 62.2% |
| 3262201 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 31.0 | 3.14e-01 | 90.3% | 59.3% |
| 3967817 | 243.1.1.34 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like | 0.50 | 27.0 | 2.89e-01 | 90.3% | 57.6% |
D3
medium
residues 146-228
Domain cluster:
rep: helicase-primase_subunit__YP_009137082__Human_alphaherpesvirus_1__10298__D146-258
D4
medium
residues 229-353
Domain cluster:
rep: ORF40__YP_009173917__Felis_catus_gammaherpesvirus_1__1452540__D204-289
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03324.21 best | Herpes_HEPA | 91.9 | 3.70e-26 | 74.4% | 95.6% |
D5
medium
residues 354-388_411-482
Domain cluster:
rep: helicase_primase_complex_associated_protein_UL8__YP_009230138__Leporid_alphaherpesvirus_4__481315__D355-393_416-481
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x9fA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 40.0 | 3.62e-01 | 87.9% | 51.7% |
| 1zbsA03 | 1.10.720.160 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.56 | 39.0 | 4.17e-01 | 71.0% | 87.6% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.56 | 42.0 | 3.71e-01 | 79.4% | 70.7% |
| 2c12A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 39.0 | 3.76e-01 | 98.1% | 63.8% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 34.0 | 3.90e-01 | 88.8% | 86.1% |
| 4x28C01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 37.0 | 3.61e-01 | 98.1% | 63.0% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.53 | 38.0 | 3.64e-01 | 76.6% | 97.0% |
| 2dlrA00 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.52 | 38.0 | 3.44e-01 | 76.6% | 82.6% |
| 1ivhA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 38.0 | 3.67e-01 | 86.0% | 67.2% |
| 1g7dA00 | 1.20.1150.12 | Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain | 0.51 | 35.0 | 3.56e-01 | 85.0% | 70.8% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.51 | 39.0 | 3.73e-01 | 82.2% | 73.4% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.50 | 38.0 | 3.63e-01 | 80.4% | 90.0% |
| 6nmnA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 38.0 | 3.58e-01 | 79.4% | 80.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3941633 | 150.1.2.13 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Haem_oxygenas_2 | 0.57 | 43.0 | 3.35e-01 | 80.4% | 91.0% |
| 3641962 | 101.1.10.36 ↗ | alpha arrays › HTH › HTH › Cyclin-like › MOM1 | 0.56 | 36.0 | 3.99e-01 | 78.5% | 82.4% |
| 3185106 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 32.0 | 3.67e-01 | 90.7% | 78.7% |
| 3477001 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 40.0 | 3.58e-01 | 77.6% | 57.3% |
| 4029967 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.54 | 37.0 | 3.64e-01 | 70.1% | 94.8% |
| 4016106 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.54 | 33.0 | 3.73e-01 | 96.3% | 82.5% |
| 3795349 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.53 | 31.0 | 3.43e-01 | 92.5% | 71.8% |
| 4220561 | 601.1.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CAS_C | 0.52 | 42.0 | 3.95e-01 | 86.0% | 92.2% |
| 3262410 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.51 | 30.0 | 3.50e-01 | 95.3% | 82.7% |
D6
medium
residues 389-410_483-584
Domain cluster:
rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289