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helicase-primase_subunit
Euk-VirColumbid_alphaherpesvirus_1
helicase-primase_subunit__YP_009352912__Columbid_alphaherpesvirus_1__93386
Identity
- Accession:
- YP_009352912 ↗
- Protein ID:
- helicase-primase_subunit
- Kingdom:
- euk
Quality
80.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Columbid_alphaherpesvirus_1
TaxID: 93386
Cluster
View cluster (61 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-155_245-262
D2
medium
residues 156-244_263-380
Domain cluster:
rep: helicase-primase_subunit__YP_009046502__Falconid_herpesvirus_1__1510155__D156-245_261-383
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03324.21 best | Herpes_HEPA | 74.8 | 7.80e-21 | 45.9% | 74.7% |
D3
medium
residues 425-443_519-536_548-573_591-611
D4
medium
residues 444-518_574-590
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.78 | 33.0 | 3.24e-01 | 81.5% | 38.5% |
| 1zvwA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.59 | 33.0 | 3.81e-01 | 80.4% | 75.8% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.57 | 48.0 | 3.79e-01 | 91.3% | 71.7% |
| 2pejA00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.55 | 42.0 | 4.04e-01 | 81.5% | 71.6% |
| 1grjA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.55 | 31.0 | 3.45e-01 | 77.2% | 70.3% |
| 2xv9A00 | 1.10.533.30 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Nematode polyprotein allergen ABA-1 | 0.52 | 45.0 | 4.04e-01 | 98.9% | 82.8% |
| 4gr2A00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.52 | 42.0 | 4.03e-01 | 100.0% | 75.5% |
| 5fgzA02 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.51 | 38.0 | 3.19e-01 | 80.4% | 63.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3189340 | 3444.1.1.0 ↗ | alpha arrays › DP domain › DP domain › DP domain | 0.67 | 44.0 | 4.62e-01 | 71.7% | 73.5% |
| 5067253 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.65 | 52.0 | 3.71e-01 | 85.9% | 93.1% |
| 3939120 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.54 | 42.0 | 3.53e-01 | 84.8% | 77.5% |
| 3220078 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 41.0 | 3.19e-01 | 83.7% | 84.7% |
| 4101712 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.53 | 47.0 | 3.11e-01 | 100.0% | 34.1% |
| 3971032 | 1051.1.1.1 ↗ | alpha superhelices › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › HOASN | 0.51 | 35.0 | 3.53e-01 | 93.5% | 70.0% |
| 4027787 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.51 | 38.0 | 3.09e-01 | 81.5% | 47.0% |
| 370037 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.51 | 44.0 | 2.90e-01 | 100.0% | 78.8% |