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helicase-primase_subunit

Euk-Vir

Bubaline_alphaherpesvirus_1

helicase-primase_subunit__YP_009664672__Bubaline_alphaherpesvirus_1__202910

Identity

Accession:
YP_009664672 ↗
Protein ID:
helicase-primase_subunit
Kingdom:
euk

Quality

89.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Bubaline_alphaherpesvirus_1

TaxID: 202910

Cluster

View cluster (61 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 616-730_747-761
PDB
Domain cluster: rep: helicase-primase_subunit__YP_009342398__Spheniscid_alphaherpesvirus_1__2560777__D627-772
D2 medium residues 1-142
PDB
Domain cluster: rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D1-152
D3 medium residues 143-224
PDB
Domain cluster: rep: helicase-primase_subunit__YP_001033936__Gallid_alphaherpesvirus_2__10390__D159-238
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 48.0 4.38e-01 100.0% 69.1%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 36.0 2.98e-01 97.6% 36.3%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 31.0 3.25e-01 93.9% 60.6%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 31.0 3.05e-01 96.3% 50.6%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 35.0 2.85e-01 97.6% 35.0%
2yzcA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.53 46.0 3.23e-01 100.0% 58.2%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 31.0 3.37e-01 98.8% 69.6%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.52 32.0 3.55e-01 96.3% 79.4%
2d44A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 2.52e-01 74.4% 62.5%
6qm7M00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 35.0 2.70e-01 72.0% 68.7%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 34.0 2.78e-01 98.8% 35.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982262 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.63 34.0 3.59e-01 96.3% 56.0%
5038444 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 36.0 3.91e-01 98.8% 67.1%
4883226 5.1.3.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.62 34.0 3.34e-01 100.0% 46.2%
3717628 5.1.3.242 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7914 0.61 38.0 2.56e-01 98.8% 16.0%
4993469 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 35.0 3.59e-01 98.8% 61.3%
3993443 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 34.0 3.53e-01 98.8% 62.7%
5016339 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.57 45.0 3.43e-01 91.5% 89.1%
3730653 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 32.0 3.44e-01 100.0% 65.7%
4567415 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 31.0 2.98e-01 96.3% 45.0%
3938972 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 31.0 3.30e-01 100.0% 61.3%
3774325 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.54 43.0 3.30e-01 91.5% 86.8%
5021439 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 31.0 3.28e-01 98.8% 62.7%
3408974 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 31.0 3.04e-01 98.8% 50.5%
4600973 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 31.0 3.37e-01 98.8% 68.6%
3235057 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.53 42.0 2.92e-01 91.5% 100.0%
3408941 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 31.0 3.19e-01 98.8% 60.0%
3704427 10.1.1.19 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like 0.52 37.0 2.70e-01 76.8% 71.4%
3887511 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 31.0 2.94e-01 98.8% 48.0%
3619264 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 30.0 2.98e-01 98.8% 52.2%
3267290 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.51 37.0 2.52e-01 76.8% 39.4%
4394424 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 30.0 2.90e-01 98.8% 48.0%
3730099 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 30.0 3.22e-01 100.0% 66.2%
3379082 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.50 43.0 2.62e-01 98.8% 19.7%
D4 medium residues 256-344
PDB
Domain cluster: rep: ORF40__YP_009173917__Felis_catus_gammaherpesvirus_1__1452540__D204-289
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03324.21 best Herpes_HEPA 49.3 7.10e-13 71.9% 67.0%
D5 medium residues 345-391_418-472
PDB
Domain cluster: rep: helicase-primase_subunit__YP_010087594__Cervid_alphaherpesvirus_3__2115790__D342-387_428-462
D6 medium residues 392-417_473-588
PDB
Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289