helicase-primase_subunit

Euk-Vir

Equid_alphaherpesvirus_1

helicase-primase_subunit__YP_053098__Equid_alphaherpesvirus_1__10326

Identity

90.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_1

TaxID: 10326

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 596-749

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009342398__Spheniscid_alphaherpesvirus_1__2560777__D627-772

D2 medium residues 1-148

PDB

Domain cluster: rep: helicase-primase_subunit__YP_068368__Suid_alphaherpesvirus_1__10345__D1-121

D3 medium residues 149-258

PDB

Domain cluster: rep: helicase-primase_subunit__YP_001033936__Gallid_alphaherpesvirus_2__10390__D159-238

D4 medium residues 259-348

PDB

Domain cluster: rep: ORF40__YP_009173917__Felis_catus_gammaherpesvirus_1__1452540__D204-289

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03324.21 best	Herpes_HEPA	68.2	9.00e-19	76.7%	67.0%

D5 medium residues 349-534

PDB

Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289

D6 medium residues 535-595

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1q8iA04	3.90.1600.10	Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain	0.66	53.0	3.71e-01	91.8%	29.7%
2dk7A00	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.58	39.0	3.73e-01	70.5%	78.1%
7wrgB01	3.40.850.10	Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain	0.50	38.0	2.50e-01	86.9%	74.3%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4629102	2484.1.1.36 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2	0.60	49.0	2.94e-01	90.2%	30.2%
3275134	2003.1.2.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.53	39.0	2.36e-01	80.3%	28.3%
3935244	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.52	42.0	2.77e-01	96.7%	52.8%
4887360	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.50	36.0	3.65e-01	78.7%	88.3%