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helicase-primase_subunit
Euk-VirHuman_gammaherpesvirus_4
helicase-primase_subunit__YP_401684__Human_gammaherpesvirus_4__10376
Identity
- Accession:
- YP_401684 ↗
- Protein ID:
- helicase-primase_subunit
- Kingdom:
- euk
Quality
55.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
human_gammaherpesvirus_4
TaxID: 10376
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 400-544
D2
medium
residues 1-125
Domain cluster:
rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D1-152
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kojB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 50.0 | 5.77e-01 | 94.4% | 98.9% |
| 4jbmB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 47.0 | 5.29e-01 | 96.0% | 88.5% |
| 1fguB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 49.0 | 5.29e-01 | 92.0% | 91.4% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 52.0 | 5.57e-01 | 96.8% | 95.5% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 53.0 | 5.54e-01 | 97.6% | 94.8% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 40.0 | 4.90e-01 | 95.2% | 98.8% |
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.61 | 31.0 | 3.64e-01 | 84.8% | 69.0% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 29.0 | 3.20e-01 | 88.0% | 58.3% |
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 30.0 | 3.17e-01 | 85.6% | 56.9% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 28.0 | 3.66e-01 | 77.6% | 88.4% |
| 3hpcX00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 42.0 | 3.95e-01 | 83.2% | 92.9% |
| 3loyA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 29.0 | 3.27e-01 | 84.8% | 68.3% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 28.0 | 2.79e-01 | 84.8% | 47.7% |
| 2qiyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 31.0 | 3.11e-01 | 88.8% | 56.0% |
| 3bf2A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.52 | 35.0 | 3.59e-01 | 88.8% | 69.6% |
| 3afcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 42.0 | 2.90e-01 | 90.4% | 38.5% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 29.0 | 3.21e-01 | 87.2% | 68.0% |
| 1ksiA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 28.0 | 3.23e-01 | 85.6% | 69.8% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974918 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.74 | 52.0 | 5.64e-01 | 97.6% | 85.7% |
| 5037301 | 2.1.1.111 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB | 0.73 | 49.0 | 5.59e-01 | 92.8% | 90.4% |
| 5036293 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 48.0 | 5.39e-01 | 93.6% | 86.0% |
| 5030516 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.71 | 52.0 | 5.59e-01 | 98.4% | 89.5% |
| 4954092 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.71 | 52.0 | 5.61e-01 | 97.6% | 89.5% |
| 3963029 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 46.0 | 5.42e-01 | 93.6% | 97.6% |
| 4940587 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 52.0 | 5.51e-01 | 98.4% | 88.2% |
| 4646070 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 51.0 | 5.41e-01 | 97.6% | 87.3% |
| 3488538 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 50.0 | 4.94e-01 | 95.2% | 72.3% |
| 5055028 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 48.0 | 5.14e-01 | 94.4% | 83.6% |
| 3268888 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.67 | 46.0 | 5.26e-01 | 92.0% | 96.7% |
| 3250428 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 45.0 | 4.33e-01 | 92.0% | 60.0% |
| 3356276 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.66 | 53.0 | 5.33e-01 | 98.4% | 83.2% |
| 5046475 | 2.2.1.0 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins | 0.66 | 52.0 | 5.35e-01 | 98.4% | 86.7% |
| 3807621 | 2.1.1.348 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223, Rep-A_N | 0.66 | 52.0 | 3.96e-01 | 98.4% | 37.8% |
| 4220176 | 2.1.1.289 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon, Rep-A_N | 0.65 | 51.0 | 3.93e-01 | 98.4% | 38.5% |
| 3441179 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.65 | 52.0 | 5.24e-01 | 98.4% | 83.2% |
| 4137219 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.65 | 49.0 | 5.48e-01 | 95.2% | 100.0% |
| 3611898 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 51.0 | 5.12e-01 | 96.8% | 82.4% |
| 3733907 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.64 | 51.0 | 4.95e-01 | 98.4% | 77.0% |
| 3307397 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 47.0 | 4.52e-01 | 93.6% | 69.3% |
| 3598329 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 49.0 | 4.91e-01 | 96.8% | 82.4% |
| 3326221 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 44.0 | 4.88e-01 | 89.6% | 96.8% |
| 3392389 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 51.0 | 5.20e-01 | 96.8% | 89.2% |
| 4929844 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.59 | 41.0 | 4.70e-01 | 89.6% | 100.0% |
| 3284948 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 39.0 | 4.55e-01 | 88.0% | 100.0% |
| 4937519 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.58 | 42.0 | 4.32e-01 | 92.8% | 79.2% |
| 3789856 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 32.0 | 3.39e-01 | 90.4% | 60.9% |
| 3276225 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 38.0 | 4.03e-01 | 90.4% | 79.1% |
| 3274535 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 44.0 | 4.72e-01 | 85.6% | 98.2% |
| 5019862 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 26.0 | 3.18e-01 | 82.4% | 69.3% |
| 3243080 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.54 | 32.0 | 3.59e-01 | 88.0% | 73.0% |
| 3587514 | 243.1.1.17 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC | 0.54 | 32.0 | 3.20e-01 | 84.0% | 55.4% |
| 3423922 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.53 | 30.0 | 3.18e-01 | 86.4% | 58.8% |
| 324821 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 41.0 | 4.07e-01 | 85.6% | 97.8% |
| 5022779 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 4.18e-01 | 88.8% | 92.4% |
| 3588474 | 243.1.1.17 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC | 0.51 | 29.0 | 3.01e-01 | 83.2% | 56.7% |
| 3786831 | 5.1.4.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd | 0.51 | 42.0 | 2.86e-01 | 88.0% | 79.1% |
| 4958928 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 31.0 | 3.25e-01 | 90.4% | 66.1% |
| 3958008 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.50 | 33.0 | 3.31e-01 | 88.0% | 64.6% |
| 3214004 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 28.0 | 3.07e-01 | 82.4% | 65.0% |
D3
medium
residues 126-142_170-221_233-324
D4
medium
residues 586-636_665-709