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helicase_1

Euk-Vir

Mamestra_brassicae_multiple_nucleopolyhedrovirus

helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219

Identity

Accession:: YP_009011148 ↗
Protein ID:: helicase_1
Kingdom:: euk

Quality

78.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Mamestra_brassicae_multiple_nucleopolyhedrovirus

TaxID: 78219

Cluster

View cluster (45 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-102_147-170

PDB

D2 high residues 190-299

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	81.8	3.40e-23	92.7%	7.3%

D3 high residues 1105-1199

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	48.1	5.20e-13	100.0%	8.2%

D4 medium residues 300-447

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	80.8	7.10e-23	100.0%	12.6%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vb5A01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.63	38.0	4.53e-01	75.0%	91.5%
2pv4A00	1.10.3440.10	Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like	0.63	38.0	3.85e-01	93.2%	60.7%
2kvcA01	1.10.150.430	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle	0.61	35.0	4.34e-01	85.1%	93.2%
1zp2A02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.58	30.0	3.41e-01	93.9%	63.4%
3qybA02	1.10.8.270	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains	0.57	28.0	3.41e-01	90.5%	69.9%
3qybA03	1.10.472.80	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3	0.55	34.0	3.60e-01	93.9%	68.2%
2ppqA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.52	40.0	3.54e-01	80.4%	69.2%
2eucA00	1.10.8.570	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB	0.52	31.0	3.47e-01	87.2%	77.6%
4hzuS00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.51	40.0	3.91e-01	82.4%	93.3%
3ee4A00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.51	36.0	2.95e-01	70.9%	77.2%
8b70A01	1.20.1740.10	Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I	0.51	43.0	3.20e-01	93.9%	98.3%
4huqS00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.50	39.0	3.84e-01	82.4%	87.2%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5055626	1076.1.1.0 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related	0.58	44.0	4.47e-01	79.7%	89.3%
3640519	5051.1.1.9 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur	0.54	48.0	3.52e-01	100.0%	96.7%
3239410	188.1.1.0 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain	0.53	43.0	3.56e-01	93.9%	46.9%
3173302	5051.1.1.9 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur	0.53	47.0	3.40e-01	100.0%	92.9%
3684484	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.52	38.0	3.62e-01	77.0%	91.1%
4278431	7014.1.1.1 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA	0.51	31.0	3.15e-01	75.0%	56.7%
4028749	627.1.1.1 ↗	alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9	0.51	36.0	3.60e-01	71.6%	74.8%
5059666	1076.1.1.0 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related	0.51	45.0	4.00e-01	98.0%	78.0%
4675311	632.19.1.5 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › TMEM208_SND2	0.51	29.0	3.22e-01	87.8%	69.2%

D5 medium residues 561-629

PDB

Domain cluster: rep: helicase__YP_009118538__Condylorrhiza_vestigialis_MNPV__1592576__D600-658

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	36.1	2.20e-09	100.0%	5.6%

D6 medium residues 840-903

PDB

Domain cluster: rep: helicase__YP_009186770__Sucra_jujuba_nucleopolyhedrovirus__1563660__D871-921

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	69.0	2.50e-19	100.0%	4.7%

D7 medium residues 904-1096

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	221.0	3.40e-65	100.0%	15.1%