helicase_2

Euk-Vir

Penaeus_monodon_nudivirus

helicase_2__YP_009051917__Penaeus_monodon_nudivirus__1529056

Identity

65.3 mean pLDDT

Naldaviricetes› Lefavirales› Nudiviridae› Gammanudivirus› Penaeus_monodon_nudivirus

TaxID: 1529056

View cluster (35 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 420-592

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h8zA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.75	27.0	4.60e-01	92.5%	92.2%
4c5eC02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.64	31.0	4.02e-01	80.9%	81.2%
2cudA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.62	24.0	3.69e-01	84.4%	82.3%
2jxtA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.56	20.0	2.94e-01	96.5%	71.1%
6yllA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.54	19.0	2.68e-01	86.7%	62.2%
4osnA00	2.30.29.100	Mainly Beta › Roll › PH-domain like ›	0.51	26.0	3.24e-01	75.1%	76.4%
5i0fB04	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.51	26.0	3.54e-01	93.6%	100.0%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4946165	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.83	27.0	5.21e-01	71.7%	100.0%
4952887	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.82	27.0	5.18e-01	71.1%	100.0%
5060760	4.1.1.13 ↗	beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd	0.80	27.0	4.69e-01	72.3%	87.7%
5044373	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.78	27.0	5.00e-01	71.1%	98.3%
3261395	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.78	27.0	4.98e-01	73.4%	100.0%
3684908	4.1.1.238 ↗	beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5	0.78	27.0	4.22e-01	74.6%	76.0%
4000280	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.77	26.0	4.84e-01	71.7%	100.0%
4994957	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.77	26.0	4.78e-01	72.3%	100.0%
4357819	4.1.1.238 ↗	beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5	0.77	26.0	4.34e-01	74.6%	81.4%
4890270	4.1.1.33 ↗	beta barrels › SH3 › SH3 › SH3 › Myosin_N	0.76	23.0	4.45e-01	77.5%	92.6%
4980648	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.76	28.0	4.48e-01	71.1%	85.7%
4058174	4.1.1.97 ↗	beta barrels › SH3 › SH3 › SH3 › DUF150_C	0.70	28.0	4.61e-01	80.3%	100.0%
4348606	4.1.1.440 ↗	beta barrels › SH3 › SH3 › SH3 › PF27165	0.68	26.0	4.30e-01	71.1%	95.4%
3358753	4.1.1.381 ↗	beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5	0.59	27.0	2.82e-01	75.7%	46.1%
3881117	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.53	30.0	3.97e-01	80.9%	98.0%
4200330	4.1.1.249 ↗	beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5	0.51	31.0	3.67e-01	94.8%	84.8%

D2 medium residues 165-224

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3v7iA02	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.64	50.0	3.90e-01	100.0%	36.7%
4fxxB01	6.10.140.1790	Special › Helix non-globular › Helix Hairpins ›	0.50	41.0	3.93e-01	93.3%	98.6%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4295257	152.1.2.1 ↗	alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6	0.56	39.0	3.44e-01	90.0%	50.0%
3490435	109.4.1.1834 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_DAAF5, TPR_DNAAF5	0.54	44.0	2.70e-01	98.3%	15.8%
3958170	212.1.1.0 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like	0.50	41.0	3.84e-01	91.7%	72.0%
3215328	331.3.1.20 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C	0.50	39.0	2.74e-01	91.7%	30.2%

D3 medium residues 593-663

PDB

D4 medium residues 664-715

PDB