helicase

Euk-Vir

Alcelaphine_gammaherpesvirus_1

helicase__NP_065542__Alcelaphine_gammaherpesvirus_1__35252

Identity

79.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Alcelaphine_gammaherpesvirus_1

TaxID: 35252

View cluster (90 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-98_132-226

PDB

Domain cluster: rep: ORF35__NP_733888__Callitrichine_gammaherpesvirus_3__106331__D45-78_114-298

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13604.13 best	AAA_30	30.4	4.60e-07	68.4%	45.6%
PF02689.21	Herpes_Helicase	136.5	1.30e-39	54.8%	11.9%
PF02689.21	Herpes_Helicase	119.8	1.40e-34	47.5%	10.5%

D2 medium residues 227-290_760-781

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_010084986__Beluga_whale_alphaherpesvirus_1__1434720__D274-286_311-353_838-857

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	119.0	2.40e-34	80.2%	8.3%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3g2bA00	1.10.10.1150	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD)	0.51	28.0	2.84e-01	95.3%	50.0%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3937747	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.54	33.0	2.35e-01	84.9%	17.7%
4329718	7011.1.1.6 ↗	alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C	0.51	43.0	2.82e-01	93.0%	100.0%
2734280	3905.1.1.1 ↗	extended segments › Mitoribosomal protein mL42 › Mitoribosomal protein mL42 › Mitoribosomal protein mL42 › MRP-S32	0.51	26.0	2.44e-01	86.0%	34.3%
4200583	7523.1.1.76 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lipoprotein_10, Lipoprotein_X, PF27319	0.50	43.0	2.77e-01	100.0%	35.2%
3585925	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.50	34.0	2.77e-01	70.9%	68.5%

D3 medium residues 291-370_699-759

PDB

Domain cluster: rep: helicase-primase_ATPase_subunit__YP_010087484__Phascolarctid_gammaherpesvirus_1__2249313__D338-366_706-759

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	26.7	6.60e-06	67.4%	24.1%
PF02689.21	Herpes_Helicase	126.2	1.70e-36	57.5%	9.8%
PF02689.21	Herpes_Helicase	105.1	3.90e-30	47.5%	7.4%

D4 medium residues 371-463_591-698

PDB

Domain cluster: rep: helicase-primase_helicase_subunit__YP_401681__Human_gammaherpesvirus_4__10376__D383-471_648-661_682-731

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	130.6	7.90e-38	54.2%	13.1%
PF02689.21	Herpes_Helicase	131.2	5.20e-38	48.3%	11.8%

D5 medium residues 464-590

PDB

Domain cluster: rep: helicase-primase_subunit__YP_009042021__Bovine_gammaherpesvirus_6__1504288__D477-585

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02689.21 best	Herpes_Helicase	114.3	6.40e-33	100.0%	18.2%