Back to structures

helicase

Euk-Vir

Adoxophyes_orana_nucleopolyhedrovirus

helicase__YP_002300587__Adoxophyes_orana_nucleopolyhedrovirus__542343

Identity

Accession:
YP_002300587 ↗
Protein ID:
helicase
Kingdom:
euk

Quality

77.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-64_90-189
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 81.3 5.00e-23 97.5% 11.6%
D2 high residues 1118-1198
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.85e-01 90.1% 85.4%
3k3wB03 1.10.1400.10 Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region 0.59 45.0 3.71e-01 84.0% 69.2%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.59 47.0 4.65e-01 87.7% 96.6%
1uzbA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 46.0 3.20e-01 95.1% 57.4%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.54 32.0 2.79e-01 82.7% 36.8%
3b5iA02 1.10.1200.220 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.54 38.0 3.70e-01 92.6% 65.3%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.53 33.0 3.84e-01 70.4% 96.2%
2x51A06 3.30.70.1590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 4.12e-01 82.7% 94.0%
1z9hA03 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 46.0 3.79e-01 98.8% 72.8%
3d0wA00 1.10.760.20 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 0.52 37.0 3.64e-01 74.1% 80.2%
1lvlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.28e-01 98.8% 82.9%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 3.47e-01 76.5% 90.3%
7kdfB01 1.10.418.60 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Ncd80 complex, Nuf2 subunit 0.51 38.0 3.19e-01 80.2% 70.5%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.51 35.0 3.28e-01 77.8% 56.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029145 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 50.0 3.79e-01 81.5% 35.0%
3715403 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.65 41.0 4.64e-01 82.7% 86.7%
3785028 101.1.2.165 alpha arrays › HTH › HTH › winged helix domain › ORC_WH_C 0.64 53.0 4.72e-01 91.4% 67.0%
5048577 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.60 47.0 4.77e-01 88.9% 85.0%
4410658 4246.1.1.2 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.59 42.0 2.68e-01 74.1% 58.1%
4030141 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.59 47.0 4.29e-01 87.7% 70.9%
5069130 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.59 36.0 4.15e-01 75.3% 98.0%
3270778 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.56 47.0 4.47e-01 96.3% 97.0%
3478089 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.55 41.0 3.88e-01 84.0% 64.6%
3643488 192.15.1.11 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CemA 0.55 41.0 4.23e-01 81.5% 86.7%
3734418 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.50 39.0 2.65e-01 85.2% 57.9%
3498247 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 37.0 2.78e-01 80.2% 57.8%
D3 medium residues 197-291
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 57.8 6.00e-16 100.0% 7.3%
D4 medium residues 907-1045_1074-1117
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 153.7 6.90e-45 79.2% 11.0%
PF04735.17 Baculo_helicase 39.1 2.70e-10 24.6% 3.4%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 54.0 5.26e-01 81.4% 77.2%
2r44A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 47.0 4.91e-01 72.1% 88.6%
3nbxX01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 51.0 4.91e-01 83.1% 84.7%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 54.0 4.41e-01 94.0% 79.0%
6mfvC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 43.0 4.77e-01 75.4% 94.6%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 49.0 4.52e-01 88.5% 87.8%
4ernA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 41.0 3.80e-01 71.6% 89.1%
2ekdA00 3.40.50.11570 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF257 0.56 47.0 4.57e-01 88.5% 93.1%
1nlfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 4.02e-01 87.4% 79.1%
2xvlA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 44.0 3.54e-01 86.9% 99.5%
4wiaC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 4.22e-01 88.5% 83.6%
5fhgA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 4.59e-01 93.4% 93.8%
3mizA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 34.0 3.87e-01 83.1% 86.7%
1dekA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 33.0 3.97e-01 82.0% 99.2%
4dadA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 32.0 3.67e-01 77.0% 85.9%
1r0xD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 4.00e-01 95.6% 77.9%
1b0uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.98e-01 96.2% 89.5%
6xgzE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.94e-01 94.0% 85.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954608 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.75 68.0 5.91e-01 94.5% 70.8%
4973289 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 66.0 5.74e-01 92.9% 71.3%
4959586 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.73 69.0 5.86e-01 100.0% 69.2%
5022020 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.73 65.0 5.69e-01 94.5% 72.1%
5035042 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.73 65.0 5.60e-01 94.5% 70.9%
3945876 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.72 64.0 5.60e-01 94.0% 67.5%
5003620 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.72 65.0 5.20e-01 95.1% 54.6%
5029777 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.72 64.0 5.68e-01 94.5% 72.5%
3291643 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.71 50.0 4.59e-01 70.5% 67.8%
5011495 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 56.0 5.47e-01 94.5% 75.0%
5081314 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 65.0 5.69e-01 97.8% 71.9%
4888756 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.69 49.0 4.85e-01 72.7% 75.9%
3716216 2004.1.1.181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.68 48.0 4.49e-01 72.7% 72.2%
3079191 2004.1.1.181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.68 47.0 4.67e-01 70.5% 81.8%
2810781 8001.1.1.1 alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C 0.68 53.0 4.99e-01 81.4% 71.9%
3839744 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 53.0 4.66e-01 82.5% 73.2%
4318504 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.67 48.0 4.95e-01 72.1% 91.2%
9753 2004.1.1.48 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PPV_E1_C 0.67 53.0 5.10e-01 81.4% 76.1%
3702069 2004.1.1.181 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 0.67 48.0 4.55e-01 72.7% 77.0%
3981677 2004.1.1.22 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.66 49.0 4.45e-01 76.0% 67.3%
4890928 2004.1.1.93 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynein_heavy 0.66 47.0 3.94e-01 72.7% 50.0%
4991401 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.66 56.0 4.67e-01 89.1% 95.4%
4953880 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.66 45.0 4.38e-01 76.0% 63.0%
3284346 2004.1.1.155 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_3 0.66 52.0 4.82e-01 82.0% 82.7%
4986203 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.65 47.0 4.21e-01 73.2% 63.2%
4968232 2004.1.1.66 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 0.65 48.0 4.29e-01 75.4% 66.8%
4986023 2004.1.1.254 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › BrxL_ATPase 0.65 59.0 4.90e-01 98.9% 78.8%
3952450 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.64 45.0 4.28e-01 76.0% 61.4%
3962695 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 59.0 5.11e-01 100.0% 91.9%
3385549 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.64 47.0 4.66e-01 75.4% 99.5%
4943614 2004.1.1.155 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_3 0.64 51.0 4.82e-01 82.5% 83.7%
5044874 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.64 51.0 4.55e-01 82.5% 76.0%
4950786 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.64 45.0 4.55e-01 74.9% 72.2%
4944736 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 47.0 4.34e-01 75.4% 77.8%
4991379 2004.1.1.66 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 0.64 46.0 4.33e-01 73.8% 74.1%
3602833 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.63 49.0 4.19e-01 81.4% 72.4%
5070037 2004.1.1.189 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.62 46.0 4.26e-01 76.0% 78.3%
5016962 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.62 49.0 4.39e-01 81.4% 75.6%
3457145 2004.1.1.462 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 0.61 44.0 4.45e-01 72.7% 76.7%
4941848 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 56.0 4.40e-01 100.0% 76.5%
3457828 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.60 44.0 4.26e-01 75.4% 68.5%
4542391 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 47.0 4.20e-01 88.5% 62.4%
4965658 2004.1.1.1217 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7125 0.57 48.0 4.63e-01 88.5% 82.9%
5014105 2004.1.1.66 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 0.55 47.0 3.91e-01 92.3% 79.7%
3508868 2007.1.10.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › PrpR receptor domain-like › PrpR_N 0.52 26.0 3.24e-01 94.5% 79.0%
3594143 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 44.0 3.61e-01 94.0% 71.5%