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helicase

Euk-Vir

Lymantria_xylina_nucleopolyhedrovirus

helicase__YP_003517833__Lymantria_xylina_nucleopolyhedrovirus__166921

Identity

Accession:: YP_003517833 ↗
Protein ID:: helicase
Kingdom:: euk

Quality

73.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lymantria_xylina_nucleopolyhedrovirus

TaxID: 166921

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 196-283

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	84.6	4.80e-24	100.0%	6.9%

D2 high residues 1111-1204

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	33.3	1.50e-08	100.0%	8.1%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4izzB03	1.10.10.1670	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain	0.63	50.0	4.74e-01	87.2%	99.1%
1cp9B03	1.10.1400.10	Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region	0.54	38.0	3.21e-01	72.3%	71.4%
2ixdA00	3.40.50.10320	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like	0.51	39.0	2.98e-01	81.9%	87.9%
3ns4A00	1.10.357.110	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus	0.51	39.0	3.16e-01	85.1%	67.3%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3914234	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.66	53.0	5.19e-01	89.4%	88.6%
3694079	101.1.2.290 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF3759	0.62	51.0	4.73e-01	90.4%	84.2%
3532208	7558.1.1.10 ↗	a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C	0.59	53.0	4.26e-01	100.0%	98.9%
5079042	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.58	46.0	3.73e-01	85.1%	79.4%
3446024	304.48.1.70 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Intron_maturas2	0.56	46.0	2.94e-01	90.4%	34.6%
4957898	191.1.1.63 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N	0.56	40.0	3.26e-01	76.6%	45.5%
3650978	108.1.1.27 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6	0.56	44.0	4.32e-01	84.0%	86.0%
4017134	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	47.0	4.17e-01	100.0%	95.6%
5022761	304.139.1.2 ↗	a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs	0.52	40.0	2.92e-01	84.0%	96.1%
3259174	108.1.1.73 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7	0.52	40.0	3.90e-01	84.0%	96.2%
5052910	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	41.0	3.91e-01	89.4%	98.2%
4929662	2003.1.5.81 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25	0.50	41.0	3.30e-01	91.5%	53.0%

D3 medium residues 16-63_87-111_126-186

PDB

Domain cluster: rep: DNA_helicase__YP_008378412__Choristoneura_rosaceana_nucleopolyhedrovirus__58094__D1-62_93-207

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	51.7	4.30e-14	83.6%	9.4%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2l6oA01	2.40.10.320	Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain	0.60	28.0	3.61e-01	87.3%	77.8%
4iajA00	3.30.1490.390	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649	0.58	30.0	3.87e-01	88.8%	86.8%
3vxvA00	3.30.890.10	Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A	0.56	21.0	3.02e-01	90.3%	70.8%
1a0iA01	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.54	27.0	3.29e-01	81.3%	73.5%
2ww8A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	28.0	3.13e-01	87.3%	65.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
224066	822.3.1.1 ↗	a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649	0.59	31.0	3.92e-01	88.8%	87.0%
3282305	4187.1.1.0 ↗	a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like	0.52	27.0	3.48e-01	100.0%	92.9%
4588536	10.12.1.52 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8	0.50	41.0	3.16e-01	87.3%	62.2%

D4 medium residues 358-424

PDB

D5 medium residues 437-489

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4annA00	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.64	46.0	3.25e-01	77.4%	29.0%
1ekjA00	3.40.1050.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase	0.64	47.0	3.09e-01	77.4%	40.5%
2mh3A00	4.10.280.10	Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain	0.63	52.0	4.81e-01	92.5%	74.3%
6pw7A02	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.58	34.0	3.10e-01	92.5%	43.7%
4lrvF00	1.10.1220.160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE	0.55	42.0	3.54e-01	90.6%	84.5%
2nyxB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	46.0	3.42e-01	100.0%	78.2%
2vkhA03	1.10.10.1780	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.52	36.0	3.34e-01	73.6%	79.7%
6ofuA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.50	40.0	2.68e-01	98.1%	95.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3844521	6171.1.1.0 ↗	alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases	0.66	51.0	3.77e-01	83.0%	32.6%

D6 medium residues 915-1028

PDB

Domain cluster: rep: DNA_helicase__YP_009666743__Mythimna_unipuncta_nucleopolyhedrovirus__447897__D942-1031

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	100.7	6.90e-29	100.0%	8.8%