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helicase

Euk-Vir

Agrotis_segetum_nucleopolyhedrovirus_B

helicase__YP_009112637__Agrotis_segetum_nucleopolyhedrovirus_B__1580580

Identity

Accession:: YP_009112637 ↗
Protein ID:: helicase
Kingdom:: euk

Quality

77.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Agrotis_segetum_nucleopolyhedrovirus_B

TaxID: 1580580

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1126-1218

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	46.3	1.90e-12	100.0%	8.0%

D2 medium residues 21-68_91-103

PDB

D3 medium residues 104-304

PDB

Domain cluster: rep: helicase-1__YP_006908593__Epinotia_aporema_granulovirus__166056__D14-190

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	176.8	7.10e-52	98.0%	15.4%

D4 medium residues 305-450

PDB

Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	82.2	2.60e-23	100.0%	12.4%

D5 medium residues 577-663_675-691_834-857

PDB

Domain cluster: rep: P143__YP_009116998__Pseudoplusia_includens_SNPV_IE__1592335__D559-634_819-841

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	43.9	9.60e-12	81.2%	8.9%

D6 medium residues 692-787

PDB

Domain cluster: rep: DNA_helicase__YP_009505890__Spodoptera_littoralis_nucleopolyhedrovirus__10456__D726-834

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	34.9	5.00e-09	100.0%	7.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3s64A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.54	41.0	4.36e-01	90.6%	96.3%
3fdqA01	1.20.120.1030	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain	0.54	42.0	3.97e-01	86.5%	96.7%
3ripA02	1.20.120.1900	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain	0.54	45.0	3.42e-01	100.0%	92.1%
4kc9A02	1.20.120.1750	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.53	47.0	3.63e-01	100.0%	71.5%
3cuxA02	1.20.1220.12	Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III	0.52	41.0	3.85e-01	86.5%	87.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3302599	5086.1.1.128 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF599	0.57	42.0	3.87e-01	77.1%	89.6%
3972445	611.4.1.2 ↗	alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like › Acyl-CoA_dh_C	0.54	39.0	3.51e-01	76.0%	91.9%
3318512	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.53	42.0	3.77e-01	93.8%	59.3%

D7 medium residues 858-932_1056-1097

PDB

Domain cluster: rep: helicase__YP_008720025__Clostera_anastomosis_granulovirus_Henan__1986291__D754-824_981-1016

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	87.5	6.60e-25	67.5%	5.8%
PF04735.17	Baculo_helicase	36.4	1.70e-09	36.8%	3.1%