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helicase

Euk-Vir

Sucra_jujuba_nucleopolyhedrovirus

helicase__YP_009186770__Sucra_jujuba_nucleopolyhedrovirus__1563660

Identity

Accession:: YP_009186770 ↗
Protein ID:: helicase
Kingdom:: euk

Quality

78.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Sucra_jujuba_nucleopolyhedrovirus

TaxID: 1563660

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1141-1232

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	34.5	6.40e-09	100.0%	7.9%

D2 medium residues 1-191

PDB

Domain cluster: rep: DNA_helicase__YP_008378412__Choristoneura_rosaceana_nucleopolyhedrovirus__58094__D1-62_93-207

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	83.9	8.20e-24	91.1%	12.3%

D3 medium residues 192-282

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	89.6	1.50e-25	100.0%	7.3%

D4 medium residues 314-481

PDB

Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	90.2	9.80e-26	100.0%	14.7%

D5 medium residues 684-795_844-855

PDB

Domain cluster: rep: DNA_helicase__YP_009505890__Spodoptera_littoralis_nucleopolyhedrovirus__10456__D726-834

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	29.5	2.20e-07	95.2%	8.2%

D6 medium residues 871-921

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	64.9	4.50e-18	100.0%	4.1%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2l4mA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.68	43.0	3.94e-01	80.4%	47.8%
3keyA01	1.10.10.1080	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain	0.66	51.0	4.40e-01	88.2%	54.0%
3bg5B07	1.10.10.2790	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.62	39.0	4.13e-01	90.2%	71.7%
2oznB01	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.62	45.0	3.90e-01	78.4%	87.5%
3l8kA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.60	45.0	3.07e-01	86.3%	21.7%
3olcX01	3.40.50.10190	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain	0.60	41.0	3.44e-01	74.5%	88.4%
6zhiB02	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.59	43.0	3.71e-01	78.4%	62.7%
4rslA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.58	45.0	3.08e-01	94.1%	67.3%
4fcgA00	3.80.10.10	Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor	0.57	42.0	2.73e-01	86.3%	34.1%
1asuA00	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.56	44.0	3.16e-01	90.2%	29.6%
2fsjA01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.56	42.0	2.99e-01	86.3%	43.3%
2mh3A00	4.10.280.10	Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain	0.54	38.0	3.53e-01	80.4%	57.1%
2il5A00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.53	47.0	3.31e-01	100.0%	35.8%
1enwA00	1.10.472.30	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Transcription elongation factor S-II, central domain	0.53	44.0	3.52e-01	100.0%	57.0%
3r0qA02	2.70.160.11	Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1	0.52	39.0	2.71e-01	86.3%	22.1%
5gubB02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.50	41.0	2.70e-01	100.0%	39.8%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3365906	101.1.10.7 ↗	alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C	0.81	60.0	4.78e-01	80.4%	41.0%
5078302	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.77	62.0	4.94e-01	88.2%	76.0%
3284058	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.77	60.0	5.09e-01	86.3%	51.8%
3231906	397.7.1.4 ↗	few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › C_tripleX	0.69	51.0	5.34e-01	90.2%	93.3%
3533067	101.1.2.352 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5	0.68	50.0	4.63e-01	84.3%	60.0%
4852268	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.67	52.0	4.29e-01	88.2%	46.9%
4981595	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.65	51.0	4.17e-01	88.2%	64.0%
5047497	1045.1.1.0 ↗	alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11	0.65	56.0	5.22e-01	100.0%	83.1%
5021988	148.1.3.409 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › BrxL_ATPase	0.65	44.0	3.81e-01	86.3%	42.2%
4017153	192.15.1.127 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › MIS13	0.62	51.0	4.56e-01	94.1%	89.3%
2491366	3678.1.1.1 ↗	alpha arrays › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain › TED	0.62	46.0	4.29e-01	84.3%	100.0%
3991955	236.1.1.1 ↗	beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N	0.61	47.0	3.26e-01	92.2%	62.1%
4440860	632.21.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › DUF7917	0.58	40.0	3.35e-01	74.5%	45.0%
3754014	221.1.1.55 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL	0.58	49.0	4.29e-01	98.0%	72.5%
4032129	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.58	41.0	3.95e-01	82.4%	69.2%
5025487	7574.1.1.0 ↗	a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding)	0.56	47.0	3.42e-01	96.1%	53.3%

D7 medium residues 948-1051

PDB

Domain cluster: rep: DNA_helicase__YP_009666743__Mythimna_unipuncta_nucleopolyhedrovirus__447897__D942-1031

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	99.4	1.70e-28	100.0%	8.0%