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helicase

Euk-Vir

Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus

helicase__YP_009316085__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591

Identity

Accession:: YP_009316085 ↗
Protein ID:: helicase
Kingdom:: euk

Quality

76.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus

TaxID: 268591

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 320-485_538-561

PDB

Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	108.1	4.00e-31	87.9%	14.4%

D2 high residues 1103-1210

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	118.7	2.60e-34	100.0%	8.0%

D3 medium residues 1-57

PDB

D4 medium residues 199-275

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	68.9	2.70e-19	100.0%	6.0%

D5 medium residues 583-699_816-833

PDB

Domain cluster: rep: P143__YP_009116998__Pseudoplusia_includens_SNPV_IE__1592335__D559-634_819-841

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	116.1	1.60e-33	99.3%	9.6%

CATH (27)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jdiG01	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.78	33.0	4.94e-01	71.1%	90.2%
3mq1A01	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.76	36.0	4.40e-01	77.0%	68.5%
1zpyA00	6.10.140.1960	Special › Helix non-globular › Helix Hairpins ›	0.73	41.0	4.95e-01	80.0%	82.4%
3bt5A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.73	36.0	3.49e-01	83.0%	42.4%
1yo7A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.72	36.0	3.86e-01	77.0%	55.0%
2f2gA00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.69	43.0	3.65e-01	91.9%	39.1%
1wpaA01	6.10.140.340	Special › Helix non-globular › Helix Hairpins ›	0.69	39.0	4.56e-01	85.9%	76.8%
4asvA00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.69	34.0	4.34e-01	93.3%	81.0%
3fppA03	6.10.140.1990	Special › Helix non-globular › Helix Hairpins ›	0.68	37.0	4.56e-01	79.3%	83.0%
4h63H01	1.20.58.1710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	36.0	4.73e-01	78.5%	100.0%
5b1aC01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.65	31.0	4.23e-01	77.8%	89.7%
3ctwB00	1.10.8.930	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465	0.62	34.0	3.64e-01	73.3%	59.2%
2hh7A00	1.20.58.1000	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer	0.60	35.0	4.24e-01	72.6%	89.4%
4l0rB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	32.0	4.06e-01	80.7%	93.2%
4m70I00	1.20.5.4130	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.59	31.0	3.41e-01	77.8%	60.2%
4gltA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.57	42.0	4.56e-01	77.0%	90.4%
3r2qA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.56	41.0	4.46e-01	74.8%	89.4%
6tqfA01	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.56	48.0	3.47e-01	93.3%	51.7%
1fioA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	41.0	3.72e-01	78.5%	100.0%
1ydxA02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.55	35.0	4.21e-01	83.7%	96.7%
1ciiA01	1.20.250.10	Mainly Alpha › Up-down Bundle › Colicin Ia; domain 1 › Colicin Ia, domain 1	0.55	41.0	2.99e-01	76.3%	31.4%
4cqiA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	39.0	4.43e-01	85.9%	93.5%
7wivA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	45.0	3.44e-01	91.1%	43.0%
2xgjA04	1.20.1500.20	Mainly Alpha › Up-down Bundle › YheA-like fold ›	0.53	40.0	4.07e-01	100.0%	81.8%
6humG01	1.20.120.1200	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	0.52	37.0	3.52e-01	73.3%	78.1%
2q12A00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.51	38.0	3.19e-01	78.5%	65.7%
2v0oB00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.50	39.0	3.15e-01	82.2%	71.6%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4543996	3600.1.1.1 ↗	alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › YlqD	0.75	38.0	4.29e-01	77.0%	62.9%
3165479	1075.4.1.2 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane_2	0.73	51.0	3.73e-01	71.1%	86.9%
3073109	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.72	38.0	5.05e-01	79.3%	93.2%
4806319	3755.1.1.2 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › YscO-like	0.72	37.0	4.69e-01	78.5%	81.9%
3435096	192.29.1.216 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF632	0.69	39.0	4.15e-01	70.4%	62.5%
3464011	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.64	49.0	3.41e-01	80.0%	94.2%
4979114	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.61	35.0	3.68e-01	81.5%	60.0%
3465330	4177.1.1.11 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632	0.61	44.0	4.04e-01	74.1%	87.6%
3814372	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.60	37.0	4.22e-01	76.3%	81.0%
3390311	604.7.1.0 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A	0.59	42.0	4.64e-01	83.7%	89.1%
3987794	1075.1.2.16 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › DUF1430	0.59	49.0	3.66e-01	90.4%	36.8%
3213897	5001.1.1.45 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sra	0.58	42.0	3.09e-01	79.3%	30.9%
3239156	5001.1.1.45 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sra	0.57	41.0	3.04e-01	79.3%	30.9%
3601151	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.56	42.0	3.88e-01	77.0%	67.1%
2492086	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.55	44.0	4.33e-01	84.4%	97.3%
3403179	604.7.1.1 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA	0.55	40.0	4.50e-01	91.9%	97.1%
4026926	604.7.1.1 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA	0.54	45.0	4.56e-01	88.9%	93.3%
3590184	3711.1.1.0 ↗	alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein	0.53	34.0	3.43e-01	91.1%	63.0%
3934585	3755.3.1.465 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A	0.51	42.0	4.07e-01	87.4%	91.3%

D6 medium residues 700-815

PDB

Domain cluster: rep: helicase__YP_009666576__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D694-791

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	87.5	6.60e-25	99.1%	8.3%

D7 medium residues 834-903

PDB

Domain cluster: rep: helicase__YP_009186770__Sucra_jujuba_nucleopolyhedrovirus__1563660__D871-921

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	93.3	1.20e-26	100.0%	5.3%

D8 medium residues 904-1055

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	231.0	3.30e-68	100.0%	11.9%