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helicase

Euk-Vir

Operophtera_brumata_nucleopolyhedrovirus

helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267

Identity

Accession:
YP_009552640 ↗
Protein ID:
helicase
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Operophtera_brumata_nucleopolyhedrovirus

TaxID: 1046267

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61_81-91
PDB
Domain cluster: rep: helicase__YP_009666576__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D1-61_84-94
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i8nA00 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.62 50.0 4.71e-01 90.3% 76.4%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.60 46.0 3.69e-01 81.9% 94.9%
2k13X00 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.57 46.0 4.15e-01 93.1% 75.7%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.56 42.0 3.03e-01 81.9% 63.8%
1w8kA02 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.55 46.0 4.04e-01 94.4% 68.2%
6f95A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 45.0 3.63e-01 95.8% 90.5%
2m88A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 37.0 3.58e-01 76.4% 90.7%
1gmnA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.53 43.0 4.04e-01 90.3% 83.0%
4c23B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 2.82e-01 83.3% 85.5%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.51 36.0 3.07e-01 76.4% 91.7%
4durB01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.51 42.0 4.09e-01 91.7% 81.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3782443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 48.0 3.66e-01 70.8% 38.8%
3785874 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.64 45.0 4.05e-01 73.6% 70.0%
4636769 304.24.1.4 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.60 45.0 3.67e-01 80.6% 74.8%
3712235 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.57 49.0 3.83e-01 100.0% 59.4%
3888998 109.4.1.872 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_INTS2-bd 0.57 49.0 2.69e-01 98.6% 7.5%
3630326 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.55 45.0 4.01e-01 91.7% 66.7%
4126506 375.1.1.128 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.55 33.0 3.89e-01 79.2% 86.0%
3928896 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.54 44.0 4.16e-01 91.7% 84.4%
3505196 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.54 44.0 4.21e-01 91.7% 82.4%
3240836 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.54 44.0 4.31e-01 91.7% 86.3%
3305572 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.53 40.0 2.66e-01 83.3% 73.4%
3619647 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.53 43.0 3.91e-01 91.7% 68.0%
4000318 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.52 37.0 3.98e-01 90.3% 90.0%
3246158 390.1.1.1 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.51 41.0 3.97e-01 91.7% 84.7%
D2 medium residues 92-196
PDB
Domain cluster: rep: helicase__YP_006607831__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D33-112
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 39.7 1.80e-10 98.1% 7.6%
D3 medium residues 197-314
PDB
D4 medium residues 315-463
PDB
Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 47.0 1.10e-12 94.6% 7.1%
D5 medium residues 561-611_629-661_782-882
PDB
Domain cluster: rep: DNAhel-1__YP_009121868__Spodoptera_frugiperda_granulovirus__307454__D548-603_748-830
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 91.7 3.60e-26 78.9% 7.6%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 23.0 3.14e-01 90.8% 72.2%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.55 23.0 3.56e-01 86.5% 95.9%
6dewA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 32.0 3.19e-01 94.1% 57.9%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 24.0 2.51e-01 85.4% 42.2%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.51 21.0 2.91e-01 77.3% 75.0%
2qgnA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.51 19.0 2.78e-01 93.0% 74.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3503176 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.52 25.0 2.84e-01 85.4% 57.3%
3483536 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.52 29.0 3.40e-01 87.6% 79.2%
3814336 603.2.1.13 ↗ alpha bundles › STAT-like › STAT › STAT › NET2A_C 0.50 28.0 3.02e-01 93.5% 62.6%
D6 medium residues 883-1006
PDB
Domain cluster: rep: DNA_helicase__YP_009666743__Mythimna_unipuncta_nucleopolyhedrovirus__447897__D942-1031
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04735.17 best Baculo_helicase 84.6 4.90e-24 100.0% 9.6%
D7 medium residues 1095-1177
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eg3A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.67 54.0 5.28e-01 89.2% 92.3%
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.56e-01 90.4% 100.0%
5jgjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.62e-01 95.2% 47.2%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 45.0 4.49e-01 90.4% 86.2%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.56 39.0 3.16e-01 74.7% 95.5%
3ccfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 46.0 3.42e-01 95.2% 43.3%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.55 40.0 4.13e-01 77.1% 100.0%
1eg3A04 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 41.0 4.15e-01 83.1% 86.6%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 43.0 4.32e-01 92.8% 96.6%
4hfvA01 1.20.1440.330 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 37.0 3.41e-01 74.7% 90.6%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.69e-01 89.2% 79.5%
3e4cB00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 2.94e-01 88.0% 27.1%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.52 30.0 3.33e-01 95.2% 71.6%
1ywqA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 37.0 2.90e-01 79.5% 55.8%
1kpgD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.89e-01 90.4% 94.0%
5hmpB02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 4.09e-01 79.5% 98.4%
3w9iD03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.51 42.0 3.97e-01 92.8% 88.3%
1t6cA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.50 40.0 3.20e-01 89.2% 44.2%
5i0hA02 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.50 37.0 3.91e-01 80.7% 97.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 62.0 5.56e-01 98.8% 77.4%
5081315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.95e-01 89.2% 100.0%
3177239 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.67 59.0 4.97e-01 96.4% 91.1%
4560206 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.67 55.0 5.44e-01 91.6% 85.6%
3883278 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.66 59.0 5.63e-01 97.6% 90.5%
3498779 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.66 56.0 5.61e-01 94.0% 98.8%
3698543 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.66 55.0 5.14e-01 92.8% 85.7%
3856461 108.1.1.18 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_2 0.65 53.0 4.75e-01 90.4% 70.0%
4994221 4020.1.1.3 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › TFX_C 0.65 43.0 4.62e-01 81.9% 81.4%
3713916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.95e-01 88.0% 85.0%
3898745 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.64 57.0 5.47e-01 98.8% 93.7%
3537242 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.64 56.0 5.32e-01 97.6% 84.0%
3393116 101.1.2.74 ↗ alpha arrays › HTH › HTH › winged helix domain › Cnd2 0.63 52.0 4.75e-01 89.2% 87.3%
4159466 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.63 47.0 4.06e-01 94.0% 50.4%
4200761 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 53.0 3.64e-01 95.2% 39.9%
1736242 2003.1.5.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran 0.60 50.0 3.52e-01 94.0% 39.4%
3544517 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.57 42.0 4.15e-01 78.3% 77.8%
4804034 304.48.1.12 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol 0.57 43.0 3.81e-01 81.9% 72.6%
3941182 101.1.1.52 ↗ alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD 0.54 30.0 3.35e-01 74.7% 67.7%
4933514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 4.03e-01 100.0% 95.0%
3938196 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.54 45.0 4.04e-01 92.8% 65.8%
3211387 327.19.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › Mlh1_C 0.53 38.0 3.57e-01 75.9% 84.8%
3415227 2006.1.6.19 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › IML1 0.53 46.0 3.27e-01 98.8% 90.5%
3444977 109.4.1.233 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS53_C 0.52 42.0 2.94e-01 91.6% 32.4%
3859640 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 39.0 3.09e-01 81.9% 54.2%
5075097 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.52 42.0 3.03e-01 91.6% 41.1%
3963187 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 41.0 2.92e-01 90.4% 94.6%
3949887 2003.1.5.152 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS, Methyltransf_25 0.50 40.0 2.86e-01 90.4% 90.7%