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helicase

Euk-Vir

Oxyplax_ochracea_nucleopolyhedrovirus

helicase__YP_009666576__Oxyplax_ochracea_nucleopolyhedrovirus__2083176

Identity

Accession:: YP_009666576 ↗
Protein ID:: helicase
Kingdom:: euk

Quality

76.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Oxyplax_ochracea_nucleopolyhedrovirus

TaxID: 2083176

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61_84-94

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	54.4	6.30e-15	86.1%	4.3%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1i8nA00	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.62	53.0	4.94e-01	94.4%	76.4%
2k13X00	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.59	48.0	4.43e-01	95.8%	68.0%
2h5eA03	3.30.70.3280	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III	0.58	45.0	3.69e-01	84.7%	94.9%
1w8kA02	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.56	47.0	4.15e-01	94.4%	75.5%
1gmnA01	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.55	46.0	4.38e-01	94.4%	84.1%
3ogkH02	3.80.10.10	Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor	0.54	46.0	2.78e-01	97.2%	92.3%
3jcmH04	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.54	39.0	3.86e-01	98.6%	74.0%
2jveA00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.52	37.0	3.75e-01	80.6%	78.9%
2dy1A03	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.52	37.0	3.70e-01	98.6%	73.7%
3bjaA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	40.0	3.31e-01	87.5%	85.6%
1es7B00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.51	38.0	3.70e-01	81.9%	71.1%
1f94A00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.51	35.0	3.72e-01	80.6%	82.5%
2kigA00	2.30.29.110	Mainly Beta › Roll › PH-domain like ›	0.51	40.0	3.20e-01	88.9%	80.7%
2yweA03	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.50	37.0	3.64e-01	94.4%	72.0%
2efpA02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.50	38.0	3.53e-01	98.6%	62.2%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3785874	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.71	51.0	4.57e-01	76.4%	67.0%
4027901	390.1.1.0 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like	0.59	47.0	4.60e-01	94.4%	80.0%
3241712	390.1.1.7 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3	0.59	45.0	4.50e-01	94.4%	81.3%
3937508	390.1.1.1 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1	0.57	47.0	4.63e-01	94.4%	87.5%
3246158	390.1.1.1 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1	0.57	47.0	4.52e-01	94.4%	83.5%
3240213	390.1.1.1 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1	0.56	46.0	4.74e-01	94.4%	95.7%
4073616	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.56	38.0	3.97e-01	95.8%	80.0%
4089149	304.8.1.24 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129	0.55	38.0	3.78e-01	95.8%	68.0%
3989567	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.55	36.0	3.89e-01	95.8%	83.3%

D2 medium residues 95-285

PDB

Domain cluster: rep: helicase-1__YP_006908593__Epinotia_aporema_granulovirus__166056__D14-190

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	229.9	6.80e-68	100.0%	15.3%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5mj6A03	2.60.40.1910	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	23.0	3.44e-01	95.3%	95.0%
3fn2A00	3.30.2200.10	Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940	0.51	23.0	3.12e-01	77.5%	81.4%

D3 medium residues 314-477

PDB

Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	131.5	3.40e-38	100.0%	14.1%

D4 medium residues 576-643

PDB

Domain cluster: rep: helicase__YP_009118538__Condylorrhiza_vestigialis_MNPV__1592576__D600-658

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	84.3	6.20e-24	100.0%	5.4%

D5 medium residues 644-693

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	29.2	2.70e-07	100.0%	4.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kl4A03	1.10.260.30	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain	0.55	38.0	3.02e-01	72.0%	38.5%

D6 medium residues 694-791

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	79.1	2.20e-22	100.0%	7.8%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x49A03	1.10.8.540	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3	0.64	40.0	4.21e-01	98.0%	68.9%
3na7A00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.61	46.0	3.52e-01	80.6%	97.0%
1svmA01	1.10.10.510	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain	0.56	35.0	3.66e-01	74.5%	66.7%
2qzcA00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.54	42.0	3.32e-01	83.7%	94.3%
1s05A00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.51	41.0	3.79e-01	88.8%	88.4%
3m7gA02	1.10.8.1010	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.50	38.0	3.90e-01	79.6%	84.2%
1a7vA00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.50	40.0	3.75e-01	87.8%	89.6%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3725616	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.62	45.0	3.86e-01	76.5%	64.4%
3316215	109.46.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH	0.59	44.0	3.72e-01	79.6%	68.2%
3736826	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.59	51.0	4.48e-01	94.9%	76.6%
3933507	5001.1.1.32 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a	0.58	45.0	3.27e-01	85.7%	80.0%
3289554	106.1.1.11 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N	0.56	39.0	3.67e-01	71.4%	70.0%
3933311	5001.1.1.32 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a	0.56	42.0	3.23e-01	81.6%	89.0%
3774408	544.1.1.0 ↗	alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18	0.55	44.0	4.21e-01	99.0%	74.6%
3748949	544.1.1.0 ↗	alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18	0.54	43.0	4.24e-01	99.0%	78.0%
1180303	632.19.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › RICH	0.53	36.0	3.88e-01	89.8%	84.1%
4016102	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.52	44.0	3.99e-01	94.9%	83.0%
3453492	611.9.1.4 ↗	alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N	0.52	44.0	4.10e-01	94.9%	84.0%
4964390	3883.1.1.1 ↗	alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf	0.51	46.0	3.54e-01	100.0%	66.8%
5031839	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.50	36.0	2.45e-01	75.5%	84.0%

D7 medium residues 882-1070

PDB

Domain cluster: rep: SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00013__D158-375

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	303.6	3.90e-90	100.0%	14.7%

D8 medium residues 1109-1179

PDB