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helicase

Euk-Vir

African_swine_fever_virus

helicase__YP_009702687__African_swine_fever_virus__10497

Identity

Accession:: YP_009702687 ↗
Protein ID:: helicase
Kingdom:: euk

Quality

70.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Asfuvirales› Asfarviridae› Asfivirus› African_swine_fever_virus

TaxID: 10497

Cluster

View cluster (106 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-275_591-609

PDB

Domain cluster: rep: HQ123590.1__ADW08988.1__CN77-20-1__00001__D9-139_144-252

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00176.30 best	SNF2-rel_dom	40.4	2.70e-10	93.9%	69.1%
PF04851.22	ResIII	29.6	8.60e-07	64.9%	86.6%

D2 medium residues 277-290_378-398_497-568

PDB

Domain cluster: rep: Q706L__YP_009704073__African_swine_fever_virus_Georgia_2007_1__874269__D275-285_375-397_504-572

D3 medium residues 291-377

PDB

D4 medium residues 399-496

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hl6A01	3.30.1300.50	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain	0.62	27.0	3.10e-01	78.6%	51.4%
3ossC00	2.30.30.830	Mainly Beta › Roll › SH3 type barrels. ›	0.54	32.0	3.80e-01	80.6%	89.2%
1g29102	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.53	26.0	3.55e-01	78.6%	100.0%
3d3rA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.52	28.0	3.07e-01	74.5%	60.2%
5mmjp00	3.30.1320.10	Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16	0.52	39.0	4.22e-01	93.9%	100.0%
2it1A03	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.51	28.0	3.44e-01	87.8%	83.6%
3doaA01	2.30.310.10	Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain	0.51	36.0	3.17e-01	73.5%	62.7%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4079979	264.2.1.0 ↗	beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain	0.62	31.0	3.30e-01	80.6%	52.2%
3287310	211.1.1.41 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › PF31120	0.61	26.0	3.24e-01	71.4%	61.7%
3308710	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	31.0	3.57e-01	87.8%	67.1%
4943298	264.2.1.1 ↗	beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac	0.58	33.0	3.25e-01	80.6%	51.4%
3169347	2006.1.1.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like	0.56	49.0	3.63e-01	100.0%	46.3%
3278314	2.4.1.2 ↗	beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2	0.55	28.0	2.82e-01	73.5%	46.0%
5047929	2484.1.1.75 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e	0.54	47.0	3.67e-01	99.0%	48.7%
5044629	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.54	28.0	2.72e-01	79.6%	40.9%
2607438	375.13.1.1 ↗	few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt	0.53	31.0	3.48e-01	79.6%	74.7%
5050525	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.53	42.0	3.34e-01	86.7%	42.9%

D5 medium residues 644-706

PDB