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helicase

Euk-Vir

Spodoptera_exempta_nucleopolyhedrovirus

helicase__YP_010086487__Spodoptera_exempta_nucleopolyhedrovirus__1242863

Identity

Accession:: YP_010086487 ↗
Protein ID:: helicase
Kingdom:: euk

Quality

78.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_exempta_nucleopolyhedrovirus

TaxID: 1242863

Cluster

View cluster (45 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-103_148-184

PDB

Domain cluster: rep: P143__YP_009116998__Pseudoplusia_includens_SNPV_IE__1592335__D21-65_78-129_154-167

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	28.4	4.60e-07	26.4%	2.8%

D2 medium residues 191-277

PDB

Domain cluster: rep: DNA_helicase__YP_009666413__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D195-285

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	73.2	1.40e-20	100.0%	7.0%

D3 medium residues 306-431

PDB

Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	58.0	5.20e-16	100.0%	10.7%

D4 medium residues 871-905_1057-1080

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	29.2	2.60e-07	64.4%	2.7%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ofcX04	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.60	43.0	3.81e-01	100.0%	50.0%
3ousA00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	46.0	4.23e-01	88.1%	67.1%
2p9xA00	1.10.1200.200	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227	0.58	41.0	3.59e-01	76.3%	91.8%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.58	37.0	3.49e-01	96.6%	52.7%
5c8aA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.53	43.0	3.98e-01	100.0%	70.5%
2lpeA02	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.52	43.0	4.12e-01	98.3%	84.5%
7odyC01	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.52	43.0	3.81e-01	98.3%	68.5%
8d3mA02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.51	36.0	2.42e-01	76.3%	32.5%
6jlzA01	1.20.120.1070	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain	0.51	41.0	3.42e-01	91.5%	54.6%
2etdA00	1.20.1440.20	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain	0.51	42.0	3.19e-01	93.2%	55.3%
2o7gA00	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.50	40.0	3.57e-01	88.1%	85.2%
1n1cA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.50	38.0	3.46e-01	83.1%	78.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3621809	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.77	50.0	4.71e-01	76.3%	57.1%
4033427	639.2.1.0 ↗	alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR)	0.67	55.0	5.16e-01	100.0%	74.3%
1447979	3909.1.1.1 ↗	alpha bundles › NisB C-terminal helical domain › NisB C-terminal helical domain › NisB C-terminal helical domain › Lant_dehydr_C	0.61	54.0	4.08e-01	100.0%	70.2%
3600809	328.1.1.0 ↗	a+b two layers › IF3-like › AlbA-like › AlbA-like	0.56	40.0	2.95e-01	76.3%	33.3%
5036290	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.55	36.0	3.74e-01	98.3%	72.7%
5070866	632.6.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit	0.54	41.0	3.92e-01	84.7%	71.4%
4382041	7014.1.1.1 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA	0.53	37.0	3.63e-01	100.0%	66.2%
3825757	101.35.1.23 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate	0.52	45.0	4.39e-01	100.0%	89.2%
3222274	198.1.1.3 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1	0.51	37.0	3.24e-01	100.0%	48.0%
4955292	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	45.0	3.44e-01	100.0%	87.1%
4927364	192.17.1.0 ↗	alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like	0.50	43.0	4.06e-01	96.6%	78.1%

D5 medium residues 906-1056

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	162.8	1.30e-47	100.0%	11.9%

D6 medium residues 1107-1200

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	44.6	6.00e-12	100.0%	8.0%