helicase

Euk-Vir

Spodoptera_eridania_nucleopolyhedrovirus

helicase__YP_010087076__Spodoptera_eridania_nucleopolyhedrovirus__2315721

Identity

76.8 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_eridania_nucleopolyhedrovirus

TaxID: 2315721

View cluster (45 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-98_147-180

PDB

Domain cluster: rep: P143__YP_009116998__Pseudoplusia_includens_SNPV_IE__1592335__D21-65_78-129_154-167

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	26.7	1.40e-06	71.3%	3.8%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1i8nA00	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.63	37.0	4.23e-01	74.6%	78.7%
1z1bA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.59	24.0	3.27e-01	86.9%	73.7%
4iajA00	3.30.1490.390	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649	0.58	32.0	3.94e-01	86.9%	86.8%
2k13X00	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.57	39.0	4.14e-01	95.1%	81.6%
1w8kA02	3.50.4.10	Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor	0.55	37.0	3.92e-01	98.4%	76.4%
1a0iA01	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.54	29.0	3.36e-01	76.2%	73.5%
1xzwA01	2.60.40.380	Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal	0.54	32.0	3.51e-01	83.6%	72.4%
2jveA00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.53	29.0	3.52e-01	82.8%	88.7%
4r7rA00	3.30.1490.410	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883	0.50	31.0	3.16e-01	83.6%	60.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3662417	390.1.1.0 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like	0.60	33.0	3.66e-01	71.3%	65.0%
3596656	862.1.1.0 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain	0.57	51.0	3.95e-01	98.4%	94.2%
3937508	390.1.1.1 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1	0.56	32.0	3.90e-01	70.5%	86.3%
4968895	5103.1.1.2 ↗	a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › DUF1015	0.56	41.0	3.80e-01	77.0%	88.7%
1412427	3784.1.1.1 ↗	a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › DUF4883	0.50	31.0	3.17e-01	83.6%	61.2%

D2 medium residues 302-449

PDB

Domain cluster: rep: helicase_1__YP_009011148__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D300-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	77.5	7.10e-22	98.7%	12.2%

D3 medium residues 677-777

PDB

Domain cluster: rep: DNA_helicase__YP_009505890__Spodoptera_littoralis_nucleopolyhedrovirus__10456__D726-834

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	27.8	6.80e-07	100.0%	8.0%

D4 medium residues 933-1047

PDB

D5 medium residues 1117-1211

PDB

Domain cluster: rep: helicase__YP_009552640__Operophtera_brumata_nucleopolyhedrovirus__1046267__D1095-1177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04735.17 best	Baculo_helicase	50.8	7.80e-14	100.0%	8.2%