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helicase_superfamily_3

Euk-Vir

Pandoravirus_inopinatum

helicase_superfamily_3__YP_009120385__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009120385 ↗
Protein ID:
helicase_superfamily_3
Kingdom:
euk

Quality

69.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 391-629
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19263.6 best DUF5906 39.2 1.40e-09 46.0% 90.3%
D2 high residues 649-713
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.15e-01 96.9% 51.4%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.31e-01 96.9% 64.9%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.58e-01 96.9% 66.3%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.08e-01 96.9% 50.9%
2g0bH01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 43.0 3.17e-01 100.0% 29.8%
5vogA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 45.0 3.33e-01 83.1% 95.5%
2k6vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 45.0 3.38e-01 89.2% 65.7%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.77e-01 96.9% 50.8%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.64e-01 93.8% 52.4%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.68e-01 96.9% 51.3%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 3.11e-01 95.4% 42.5%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.68e-01 96.9% 55.2%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.45e-01 95.4% 61.0%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.51 27.0 3.05e-01 96.9% 64.7%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.81e-01 95.4% 70.3%
3g3sA01 3.40.630.110 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like 0.50 38.0 3.34e-01 89.2% 88.8%
1xebA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.08e-01 100.0% 38.3%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029778 101.1.2.43 ↗ alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.75 66.0 5.88e-01 100.0% 70.0%
3883278 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.73 61.0 5.37e-01 100.0% 63.2%
3739675 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 59.0 4.93e-01 96.9% 56.4%
3306699 101.1.2.517 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.68 47.0 2.93e-01 96.9% 12.4%
3238923 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.68 59.0 3.42e-01 96.9% 12.1%
3797519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 3.38e-01 96.9% 11.6%
3483771 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.67 57.0 5.05e-01 96.9% 65.3%
3413597 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.67 58.0 3.60e-01 95.4% 18.6%
4545670 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 56.0 4.96e-01 98.5% 68.7%
3926827 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.65 56.0 3.26e-01 96.9% 11.6%
3657248 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.65 56.0 4.81e-01 96.9% 62.9%
4997255 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 4.42e-01 96.9% 56.0%
2409292 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 46.0 4.05e-01 96.9% 52.9%
5026539 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.33e-01 96.9% 62.2%
3614121 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 4.62e-01 96.9% 66.3%
3549847 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.61 50.0 3.18e-01 96.9% 17.6%
4953964 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 52.0 4.39e-01 96.9% 60.0%
5005164 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.60 52.0 4.43e-01 98.5% 63.0%
3603693 101.1.2.145 ↗ alpha arrays › HTH › HTH › winged helix domain › HHH_4 0.60 50.0 3.79e-01 96.9% 37.1%
3713489 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 3.68e-01 96.9% 33.2%
4947062 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 4.02e-01 96.9% 56.8%
3206556 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.59 52.0 3.51e-01 98.5% 44.0%
3840298 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.59 48.0 3.99e-01 96.9% 50.8%
5003912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 3.87e-01 100.0% 65.6%
3587356 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.59 37.0 3.33e-01 93.8% 45.6%
3788427 101.1.2.207 ↗ alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.59 50.0 4.40e-01 98.5% 67.0%
5001098 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.05e-01 96.9% 61.1%
4004118 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 44.0 3.20e-01 96.9% 29.2%
4399086 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.57 34.0 3.10e-01 92.3% 44.7%
3739985 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.57 47.0 3.63e-01 95.4% 39.4%
3481547 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.57 46.0 3.65e-01 96.9% 41.3%
3468223 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.57 47.0 3.01e-01 95.4% 23.8%
3405388 101.1.2.664 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC, WH_GTF3C1_N 0.56 48.0 3.00e-01 100.0% 34.3%
3933222 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.55 46.0 3.55e-01 95.4% 49.7%
4394754 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.55 33.0 3.02e-01 95.4% 42.2%
4966558 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.89e-01 96.9% 63.5%
4963170 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.54 35.0 3.23e-01 95.4% 48.9%
4988082 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.67e-01 96.9% 67.1%
3604277 327.11.2.82 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.54 39.0 3.76e-01 100.0% 68.0%
3163896 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 40.0 2.83e-01 81.5% 91.9%
None — 0.52 47.0 2.92e-01 100.0% 20.8%
5023262 327.11.2.82 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.50 36.0 3.66e-01 96.9% 78.5%
D3 medium residues 34-99_154-182
PDB